Stochasticity in gene expression poses a critical challenge to the precise control of cellular function. In this paper we examine how precisely can a stochastically expressed protein attain a given target expression level. We consider a protein which is produced in bursts and which is able to control its expression via a negative feedback loop; we specifically focus on feedback of a bang-bang type which turns off the production of the protein whenever its concentration exceeds a given threshold. Using a piecewise deterministic mathematical formalism, we derive explicit expressions for the probabilistic distribution of the protein concentration, and for the mean square deviation from the target level. Employing a combination of analytic and numerical optimization, we identify the optimal value of the bang-bang threshold, in terms of minimising the deviation, and examine the dependence of the optimal value on the target level and the sub-threshold burst frequency. The systematic analysis allows us to formulate a number of quantitative and qualitative conclusions about the controllability of burst like gene expression. Finally, we outline directions for future research into the topic.
The overexpression of many proteins can often have a detrimental impact on cellular growth. This expression-growth coupling leads to positive feedback - any increase of intracellular protein concentration reduces the growth rate of cell size expansion that in turn enhances the concentration via reduced dilution. We investigate how such feedback amplifies intrinsic stochasticity in gene expression to drive a skewed distribution of the protein concentration. Our results provide an exact solution to this distribution by analytically solving the Chapman-Kolmogorov equation, and we use it to quantify the enhancement of noise/skewness as a function of expression-growth coupling. This analysis has important implications for the expression of stress factors, where high levels provide protection from stress, but come at the cost of reduced cellular proliferation. Finally, we connect these analytical results to the case of an actively degraded gene product, where the degradation machinery is working close to saturation.
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