Positive properties of haskap berries, belonging to L. caerulea, have been known for centuries. From ancient times in Japan, honeysuckle has been used to treat urinary disorders, fever, and headache, and in Korea it was used widely for upper respiratory tract infections, diabetes mellitus, and rheumatoid arthritis (Skupień et al., 2007). The fruits are rich in ascorbic acid, macroand microelements, polyphenolic compounds (especially phenolic acids), anthocyanins, proanthocyanidins, flavonoids, and other bioactive substances. The major anthocyanins are glucosides and rutinosides (Frejnagel, 2007; Rop et al., 2011;Jurikova et al., 2012). The studies presented by Frejnagel ( 2007), Małodobry et al. (2010), andOchmian et al. (2012) indicated that haskap berries exhibit antifungal and anticancer properties, antiadherence, and chemoprotective effects. Compounds contained in the fruits provide protection from cancer, tumor growth, diabetes mellitus, and cardiovascular diseases, reducing blood pressure, decreasing the risk of heart attack, preventing osteoporosis and anemia, and slowing the aging process. According to Hoppula and Karhu (2006), the biochemical composition of the fruit is strongly affected by the genotype, harvest date, and environmental conditions. Total antioxidant activity, as well as phenolic acid and flavonoid content, can vary among cultivars. There is a pressing need to develop reliable methods for identifying blue honeysuckle cultivars/clones and for assessing genetic diversity in Lonicera genotypes for practical breeding purposes. To start a breeding program it is essential to characterize the available germplasm, either morphologically or molecularly. Germplasm characterization by DNA-based molecular markers allows a better understanding of genetic variability. This is due to the determination of the level of genetic divergence and the molecular pattern of each cultivar. With these data, the breeder can plan crosses using molecular and field data, which can result in the development of superior cultivars more quickly and economically (Langridge and Chalmers, 2004;Morales et al., 2011). Molecular