Inhibiting the protein-protein interaction (PPI) between the transcription factor Nrf2 and its repressor protein Keap1 has emerged as a promising strategy to target oxidative stress in diseases, including CNS disorders. Numerous non-covalent small-molecule Keap1-Nrf2 PPI inhibitors have been reported to date, but many feature suboptimal physicochemical properties for permeating the blood-brain barrier, while others contain problematic structural moieties. Here, we present the first side-by-side assessment of all reported Keap1-Nrf2 PPI inhibitor classes using fluorescence polarization (FP), thermal shift assay (TSA), and surface plasmon resonance (SPR)-and further evaluate the compounds in an NQO1 induction cell assay and in counter tests for non-boronate ester building block 41 as the crucial carbon skeleton-building step. Synthesis of the enol triflate using the one-step NaHMDS-mediated enolization/PhNTf2-induced trapping procedure reported in the patent application 39 was not efficient in our hands, giving low yield (43% vs. 88% reported in literature 39) and significant byproduct formation. We found that using a freshly-made LiHMDS as an alternative base gave a cleaner reaction and excellent yield (quantitative). The converging SM reaction step between 38 and 41 gave several wellknown by-products, including the boronic acid, aryl boronate homo-coupling product and protodeboronation product, but could still afford the desired cross-coupling product 42 in good yield (69% vs. 33% reported in literature 39). Catalytic hydrogenation to deprotect the carboxylic acid and reduce the alkene double bond diastereoselectively furnished only the cis-cyclohexane 43 in accordance with literature; 39 this was revealed by nuclear Overhauser effect (NOE) NMR (Supporting Information Figure S1). This facial selectivity can be explained by a steric directing effect of the carboxybenzyl group. The cyclohexane carboxylic acid of 43 was finally coupled with 2-butylpyrrolidine and the pyrazole carboxylic acid deprotected to give 10 as a mixture of four stereoisomers. Attempted separation of the two diastereoisomers by preparative HPLC was unsuccessful. In the patent application, purification by HPLC is reported to give two different fractions, each containing all four stereoisomers in slightly different proportions, of which one was directly tested as a mixture. 39 Having this literature result as a reference point, we did not proceed with further purification of 10.
The transcription factor nuclear factor erythroid 2-related factor 2 (Nrf2) has a protective effect against oxidative stress and plays a major role in inflammation and central nervous system (CNS) diseases. Inhibition of the protein-protein interaction (PPI) between Nrf2 and its repressor protein, Kelch-like ECH-associated protein 1 (Keap1), leads to translocation of Nrf2 from the cytosol to the nucleus and expression of detoxifying antioxidant enzymes. To date, several non-covalent small-molecule Keap1-Nrf2 inhibitors have been identified; however, many of them contain carboxylic acids and are rather large in size, which likely prevents or decreases CNS permeability. This Perspective describes current small-molecule Keap1-Nrf2 inhibitors with experimental evidence for the ability to inhibit the Keap1-Nrf2 interaction by binding to Keap1 in a non-covalent manner. Binding data, biostructural studies, and biological activity are summarized for the inhibitors, and their potential as CNS tool compounds is discussed by analyzing physicochemical properties, including CNS multiparameter optimization (MPO) scoring algorithms. Finally, several strategies for identifying CNS-targeting Keap1 inhibitors are described.
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Among the ionotropic
glutamate receptors, the physiological role of kainate receptors is
less well understood. Although ligands with selectivity toward the
kainate receptor subtype GluK1 are available, tool compounds with
selectivity at the remaining kainate receptor subtypes are sparse.
Here, we have synthesized a series of quinoxaline-2,3-diones with
substitutions in the N1-, 6-, and 7-position to investigate
the structure–activity relationship (SAR) at GluK1–3
and GluK5. Pharmacological characterization at native and recombinant
kainate and AMPA receptors revealed that compound 37 had
a GluK3-binding affinity (K
i) of 0.142
μM and 8-fold preference for GluK3 over GluK1. Despite lower
binding affinity of 22 at GluK3 (K
i = 2.91 μM), its preference for GluK3 over GluK1 and
GluK2 was >30-fold. Compound 37 was crystallized with
the GluK1 ligand-binding domain to understand the SAR. The X-ray structure
showed that 37 stabilized the protein in an open conformation,
consistent with an antagonist binding mode.
Selective
pharmacological tool compounds are invaluable for understanding the
functions of the various ionotropic glutamate receptor subtypes. For
the kainate receptors, these compounds are few. Here we have synthesized
nine novel quinoxaline-2,3-diones with substitutions in the 7-position
to investigate the structure–activity relationship at kainate
and α-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid (AMPA)
receptors. Compound 11 exhibited the highest binding
affinity across GluK1–3 while having selectivity toward kainate
vs AMPA receptors. Compound 11 potently inhibited glutamate
evoked currents at homomeric GluK1 and GluK3 receptors in HEK293 cells
with K
b values of 65 and 39 nM, respectively.
The binding mode of 11 in the ligand binding domain of
GluK1 was investigated by X-ray crystallography, revealing that 11 stabilizes the receptor in an open conformation, consistent
with its demonstrated antagonism. Furthermore, 11 was
tested for analgesic effects in the mouse tail flick test where it
significantly increased tail flick latency at doses where 2,3-dioxo-6-nitro-1,2,3,4-tetrahydrobenzo[f]-quinoxaline-7-sulfonamide (NBQX) was ineffective.
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