The Escherichia coli dnaN159 allele encodes a mutant form of the -sliding clamp (159) that is impaired for interaction with the replicative DNA polymerase (Pol), Pol III. In addition, strains bearing the dnaN159 allele require functional Pol I for viability. We have utilized a combination of genetic and biochemical approaches to characterize the role(s) played by Pol I in the dnaN159 strain. Our findings indicate that elevated levels of Pol I partially suppress the temperature-sensitive growth phenotype of the dnaN159 strain.In addition, we demonstrate that the  clamp stimulates the processivity of Pol I in vitro and that 159 is impaired for this activity. The reduced ability of 159 to stimulate Pol I in vitro correlates with our finding that single-stranded DNA (ssDNA) gap repair is impaired in the dnaN159 strain. Taken together, these results suggest that (i) the  clamp-Pol I interaction may be important for proper Pol I function in vivo and (ii) in the absence of Pol I, ssDNA gaps may persist in the dnaN159 strain, leading to lethality of the dnaN159 ⌬polA strain.The Escherichia coli dnaN-encoded -sliding clamp functions as a homodimer and is "loaded" onto primed DNA by the multisubunit DnaX clamp loader complex (5, 21). Once loaded, the  clamp slides freely along duplex DNA and functions to tether a variety of different proteins involved in replication and repair to the DNA (4,6,7,9,19,23,24,26,28,(41)(42)(43). The dnaN159 allele encodes a mutant form of the -sliding clamp (159) that bears two amino acid substitutions: G66E (glycine at position 66 replaced with glutamic acid) and G174A (14,35,38). The G174A substitution appears to impair the ability of a hydrophobic cleft in  to interact with the eubacterial clamp-binding motif (QL[S/D]LF) that is conserved in most partner proteins reported to interact with the  clamp (8, 38). E. coli strains bearing the dnaN159 allele display temperature-sensitive growth (14,35,38) and altered DNA polymerase (Pol) usage (29,(38)(39)(40). These phenotypes appear to result, at least in part, from impaired interactions of the mutant 159 clamp protein with the replicative DNA polymerase, Pol III (38). As a result of the impaired 159-Pol III interaction, E. coli strains bearing the dnaN159 allele display increased utilization of the three SOS-regulated DNA polymerases, Pol II (polB), Pol IV (dinB), and Pol V (umuDC) (29,(38)(39)(40). In contrast to these three Pols, which under certain conditions impede growth of the dnaN159 strain (29, 39, 40), presumably by impairing DNA replication, the catalytic DNA polymerase activity of Pol I (polA) is essential for viability of the dnaN159 strain (38). Importantly, Pol I function is not required by the isogenic dnaN ϩ strain (38), indicating that Pol I plays one or more essential roles in the dnaN159 strain. Since Pol I is a multifunctional protein that participates in DNA replication, as well as numerous DNA repair pathways, several possibilities exist, including Okazaki fragment maturation (21, 31) and single-stranded DNA ...
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