Like polypeptides, peptoids, or N‐substituted glycine oligomers, have intrinsic conformational preferences due to their amide backbones and close spacing of side chain substituents. However, the conformations that peptoids adopt are distinct from polypeptides due to several structural differences: the peptoid backbone is composed of tertiary amide bonds that have trans and cis conformers similar in energy, they lack a backbone hydrogen bond donor, and have an N‐substituent. To better understand how these differences manifest in actual peptoid structures, we analyzed 46 high quality, experimentally determined peptoid structures reported in the literature to extract their backbone conformational preferences. One hundred thirty‐two monomer dihedral angle pairs were compared to the calculated energy landscape for the peptoid Ramachandran plot, and were found to fall within the expected minima. Interestingly, only two regions of the backbone dihedral angles ϕ and ψ were found to be populated that are mirror images of each other. Furthermore, these two conformers are present in both cis and trans forms. Thus, there are four primary conformers that are sufficient to describe almost all known backbone conformations for peptoid oligomers, despite conformational constraints imposed by a variety of side chains, macrocyclization, or crystal packing forces. Because these conformers are predominant in peptoid structure, and are distinct from those found in protein secondary structures, we propose a simple naming system to aid in the description and classification of peptoid structure.
A new family of quasi-one-dimensional ferromagnetic selenides with general formula Fe(x)Pb(4-x)Sb(4)Se(10) (0 < or = x < or = 2) was generated by isoelectronic substitution in octahedral positions of Pb atoms by Fe within the structure of Pb(4)Sb(4)Se(10). Two members of this family with x = 0.75 and x = 1 were synthesized as a single phase through direct combination of the elements at 823 K. Single crystal X-ray diffraction revealed that Fe(0.75)Pb(3.25)Sb(4)Se(10) crystallizes with the orthorhombic space group Pnma, whereas Fe(0.96)Pb(3.04)Sb(4)Se(10) adopts the lower symmetry monoclinic subgroup P2(1)/m (#11). Both compounds are isomorphous with Pb(4)Sb(4)Se(10), and their crystal structures consist of corrugated layers of edge-sharing bicapped trigonal prisms and octahedra around Pb atoms. Adjacent layers are interconnected by NaCl-type {SbSe} ribbons. The voids left by this arrangement are filled by the novel one-dimensional {Fe(2)Se(10)} double chains (ladder) of edge-sharing octahedra running along [010]. Temperature dependent magnetic susceptibility as well as field dependent magnetization isotherms showed that both Fe(0.75)Pb(3.25)Sb(4)Se(10) and FePb(3)Sb(4)Se(10) are ferromagnetic below 300 K and exhibit superparamagnetism at higher temperatures. A dramatic reduction in the magnetic moment per Fe(2+), approximately 0.40 micro(B), was observed in Fe(0.75)Pb(3.25)Sb(4)Se(10) and FePb(3)Sb(4)Se(10) suggesting that the Fe(x)Pb(4-x)Sb(4)Se(10) (0 < or = x < or = 2) phases are not ordinary ferromagnets where all the magnetic spins are parallel at low temperatures. Analysis of the magnetic coupling of spins located on adjacent Fe atoms (within a localized Fe(2+) moment picture) using Goodenough-Kanamori rules suggested that the magnetism within the ladder and ladder-single chain systems in Fe(x)Pb(4-x)Sb(4)Se(10) phases is controlled by competing interactions.
Mutations in the COMP, COL9A1, COL9A2, COL9A3, MATN3, and SLC26A2 genes cause approximately 70% of multiple epiphyseal dysplasia (MED) cases. The genetic changes involved in the etiology of the remaining cases are still unknown, suggesting that other genes contribute to MED development. Our goal was to identify a mutation causing an autosomal dominant form of MED in a large multigenerational family. Initially, we excluded all genes known to be associated with autosomal dominant MED by using microsatellite and SNP markers. Follow-up with wholeexome sequencing analysis revealed a mutation c.2032G>A (p.Gly678Arg) in the COL2A1 gene (NCBI Reference Sequence: NM_001844.4), which co-segregated with the disease phenotype in this family, manifested by severe hip dysplasia and osteoarthritis. One of the affected family members had a double-layered patella, which is frequently seen in patients with autosomal recessive MED caused by DTDST mutations and sporadically in the dominant form of MED caused by COL9A2 defect. K E Y W O R D Sdouble-layered patella, multiple epiphyseal dysplasia, novel mutation in COL2A1
The number of structural studies of peptoids has grown dramatically over the past 20 years. To date, over 100 high-resolution structures have been reported for peptoids, which are typically defined as N-substituted glycine oligomers. We have collected these structures and standardized their sequence representations to facilitate structural analysis as the dataset continues to grow. These structures are presented online as The Peptoid Data Bank (databank.peptoids.org), which also provides persistent links to the published structural data. This review analyzes the present collection of structures and finds extensive support for grouping side chains by their chemistry at the position adjacent to the backbone nitrogen. Groups of side chains with similar chemistry at this position show similar influences on the conformational preferences of the backbone. We also observe a relationship between the side chain and backbone conformations for many monomers that has not previously attracted significant discussion: the values of the χ 1 and ϕ dihedrals are correlated. We outline a general design strategy for attaining a specific backbone conformation based on the patterns seen in the collected structures.
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