The rise in wildfire frequency and severity across the globe has increased interest in secondary succession. However, despite the role of soil microbial communities in controlling biogeochemical cycling and their role in the regeneration of post-fire vegetation, the lack of measurements immediately post-fire and at high temporal resolution has limited understanding of microbial secondary succession. To fill this knowledge gap, we sampled soils at 17, 25, 34, 67, 95, 131, 187, 286, and 376 days after a southern California wildfire in fire-adapted chaparral shrublands. We assessed bacterial and fungal biomass with qPCR of 16S and 18S and richness and composition with Illumina MiSeq sequencing of 16S and ITS2 amplicons. Fire severely reduced bacterial biomass by 47%, bacterial richness by 46%, fungal biomass by 86%, and fungal richness by 68%. The burned bacterial and fungal communities experienced rapid succession, with 5-6 compositional turnover periods. Analogous to plants, turnover was driven by "fire-loving" pyrophilous microbes, many of which have been previously found in forests worldwide and changed markedly in abundance over time. Fungal secondary succession was initiated by the Basidiomycete yeast Geminibasidium, which traded off against the filamentous Ascomycetes Pyronema, Aspergillus, and Penicillium. For bacteria, the Proteobacteria Massilia dominated all year, but the Firmicute Bacillus and Proteobacteria Noviherbaspirillum increased in abundance over time. Our highresolution temporal sampling allowed us to capture post-fire microbial secondary successional dynamics and suggest that putative tradeoffs in thermotolerance, colonization, and competition among dominant pyrophilous microbes control microbial succession with possible implications for ecosystem function.
The rise in wildfire frequency in the western United States has increased interest in secondary succession. However, despite the role of soil microbial communities in plant regeneration and establishment, microbial secondary succession is poorly understood owing to a lack of measurements immediately post-fire and at high temporal resolution. To fill this knowledge gap, we collected soils at 2 and 3 weeks and 1, 2, 3, 4, 6, 9, and 12 months after a chaparral wildfire in Southern California. We assessed bacterial and fungal biomass with qPCR of 16S and 18S and richness and composition with Illumina MiSeq sequencing of the 16S and ITS2 amplicons. We found that fire severely reduced bacterial biomass by 47% and richness by 46%, but the impacts were stronger for fungi, with biomass decreasing by 86% and richness by 68%. These declines persisted for the entire post-fire year, but bacterial biomass and richness oscillated in response to precipitation, whereas fungal biomass and richness did not. Fungi and bacteria experienced rapid succession, with 5-6 compositional turnover periods. As with plants, fast-growing surviving microbes drove successional dynamics. For bacteria, succession was driven by the phyla Firmicutes and Proteobacteria, with the Proteobacteria Massilia dominating all successional time points, and the Firmicutes (Domibacillus and Paenibacillus) dominating early- to mid-successional stages (1-4.5 months), while the Proteobacteria Noviherbaspirillum dominated late successional stages (4.5-1 year). For fungi, succession was driven by the phyla Ascomycota, but ectomycorrhizal basidiomycetes, and the heat-resistant yeast, Geminibasidium were present in the early successional stages (1 month). However, pyrophilous filamentous Ascomycetes Pyronema, Penicillium, and Aspergillus, dominated all post-fire time points. While wildfires vastly decrease bacterial and fungal biomass and richness, similar to plants, pyrophilous bacteria and fungi increase in abundance and experience rapid succession and compositional turnover in the first post-fire year, with potential implications for post-fire chaparral regeneration
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