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Simple SummaryMonitoring livestock farmed under extensive conditions is challenging and this is particularly difficult when observing animal behaviour at an individual level. Lameness is a disease symptom that has traditionally relied on visual inspection to detect those animals with an abnormal walking pattern. More recently, accelerometer sensors have been used in other livestock industries to detect lame animals. These devices are able to record changes in activity intensity, allowing us to differentiate between a grazing, walking, and resting animal. Using these on-animal sensors, grazing, standing, walking, and lame walking were accurately detected from an ear attached sensor. With further development, this classification algorithm could be linked with an automatic livestock monitoring system to provide real time information on individual health status, something that is practically not possible under current extensive livestock production systems.AbstractLameness is a clinical symptom associated with a number of sheep diseases around the world, having adverse effects on weight gain, fertility, and lamb birth weight, and increasing the risk of secondary diseases. Current methods to identify lame animals rely on labour intensive visual inspection. The aim of this current study was to determine the ability of a collar, leg, and ear attached tri-axial accelerometer to discriminate between sound and lame gait movement in sheep. Data were separated into 10 s mutually exclusive behaviour epochs and subjected to Quadratic Discriminant Analysis (QDA). Initial analysis showed the high misclassification of lame grazing events with sound grazing and standing from all deployment modes. The final classification model, which included lame walking and all sound activity classes, yielded a prediction accuracy for lame locomotion of 82%, 35%, and 87% for the ear, collar, and leg deployments, respectively. Misclassification of sound walking with lame walking within the leg accelerometer dataset highlights the superiority of an ear mode of attachment for the classification of lame gait characteristics based on time series accelerometer data.

Behaviour is a useful indicator of an individual animal’s overall wellbeing. There is widespread agreement that measuring and monitoring individual behaviour autonomously can provide valuable opportunities to trigger and refine on-farm management decisions. Conventionally, this has required visual observation of animals across a set time period. Technological advancements, such as animal-borne accelerometers, are offering 24/7 monitoring capability. Accelerometers have been used in research to quantify animal behaviours for a number of years. Now, technology and software developers, and more recently decision support platform providers, are integrating to offer commercial solutions for the extensive livestock industries. For these systems to function commercially, data must be captured, processed and analysed in sync with data acquisition. Practically, this requires a continuous stream of data or a duty cycled data segment and, from an analytics perspective, the application of moving window algorithms to derive the required classification. The aim of this study was to evaluate the application of a ‘clean state’ moving window behaviour state classification algorithm applied to 3, 5 and 10 second duration segments of data (including behaviour transitions), to categorise data emanating from collar, leg and ear mounted accelerometers on five Merino ewes. The model was successful at categorising grazing, standing, walking and lying behaviour classes with varying sensitivity, and no significant difference in model accuracy was observed between the three moving window lengths. The accuracy in identifying behaviour classes was highest for the ear-mounted sensor (86%–95%), followed by the collar-mounted sensor (67%–88%) and leg-mounted sensor (48%–94%). Between-sheep variations in classification accuracy confirm the sensor orientation is an important source of variation in all deployment modes. This research suggests a moving window classifier is capable of segregating continuous accelerometer signals into exclusive behaviour classes and may provide an appropriate data processing framework for commercial deployments.

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The automated collection of phenotypic measurements in livestock is becoming increasingly important to both researchers and farmers. The capacity to non-invasively collect real-time data, provides the opportunity to better understand livestock behaviour and physiology and improve animal management decisions. Current climate models project that temperatures will increase across the world, influencing both local and global agriculture. Sheep that are exposed to high ambient temperatures experience heat stress and their physiology, reproductive function and performance are compromised. Body temperature is a reliable measure of heat stress and hence a good indicator of an animals’ health and well-being. Non-invasive temperature-sensing technologies have made substantial progress over the past decade. Here, we review the different technologies available and assess their suitability for inferring ovine heat stress. Specifically, the use of indwelling probes, intra-ruminal bolus insertion, thermal imaging and implantable devices are investigated. We further evaluate the capacity of behavioural tracking technology, such as global positioning systems, to identify heat stressed individuals based on the exhibition of specific behaviours. Although there are challenges associated with using real-time thermosensing data to make informed management decisions, these technologies provide new opportunities to manage heat stress in sheep. In order to obtain accurate real-time information of individual animals and facilitate prompt intervention, data collection should be entirely automated. Additionally, for accurate interpretation on-farm, the development of software which can effectively collect, manage and integrate data for sheep producer’s needs to be prioritised. Lastly, understanding known physiological thresholds will allow farmers to determine individual heat stress risk and facilitate early intervention to reduce the effects in both current and subsequent generations.