Neural oscillations have been recorded and implicated in many different basic brain and cognitive processes. For example, oscillatory neural activity has been suggested to play a role in binding and in the maintenance of information in working memory. With respect to the latter, the majority of work has focused primarily on oscillations in terms of providing a “code” in working memory. However, oscillations may additionally play a fundamental role by enabling or facilitating essential properties and behaviors that neuronal networks must exhibit in order to produce functional working memory and the processes it supports, such as combining items in memory into bound objects or separating bound objects into distinct items. In the present work, we present a biologically plausible working memory model and demonstrate that specific types of stable oscillatory dynamics that arise may play critical roles in providing mechanisms for working memory and the cognitive functions that it supports. Specifically, these roles include (1) enabling a range of different types of binding, (2) both enabling and limiting capacities of bound and distinct items held active in working memory, and (3) facilitating transitions between active working memory states as required in cognitive function. Several key results arise within the examinations, such as the occurrence of different network capacities for working memory and binding, differences in processing times for transitions in working memory states, and the emergence of a combinatorially rich and complex range of oscillatory states that are sufficient to map onto a wide range of cognitive operations supported by working memory, such as variable binding, reasoning, and language. In particular, we show that these oscillatory states and their transitions can provide a specific instantiation of current established connectionist models in representing these functions. Finally, we further characterize the dependence of the relevant oscillatory solutions on certain critical parameters, including mutual inhibition and synaptic timescales.

Scientists have long conjectured that the neocortex learns the structure of the environment in a predictive, hierarchical manner. To do so, expected, predictable features are differentiated from unexpected ones by comparing bottom-up and top-down streams of data. It is theorized that the neocortex then changes the representation of incoming stimuli, guided by differences in the responses to expected and unexpected events. Such differences in cortical responses have been observed; however, it remains unknown whether these unexpected event signals govern subsequent changes in the brain’s stimulus representations, and, thus, govern learning. Here, we show that unexpected event signals predict subsequent changes in responses to expected and unexpected stimuli in individual neurons and distal apical dendrites that are tracked over a period of days. These findings were obtained by observing layer 2/3 and layer 5 pyramidal neurons in primary visual cortex of awake, behaving mice using two-photon calcium imaging. We found that many neurons in both layers 2/3 and 5 showed large differences between their responses to expected and unexpected events. These unexpected event signals also determined how the responses evolved over subsequent days, in a manner that was different between the somata and distal apical dendrites. This difference between the somata and distal apical dendrites may be important for hierarchical computation, given that these two compartments tend to receive bottom-up and top-down information, respectively. Together, our results provide novel evidence that the neocortex indeed instantiates a predictive hierarchical model in which unexpected events drive learning.

The apical dendrites of pyramidal neurons in sensory cortex receive primarily top-down signals from associative and motor regions, while cell bodies and nearby dendrites are heavily targeted by locally recurrent or bottom-up inputs from the sensory periphery. Based on these differences, a number of theories in computational neuroscience postulate a unique role for apical dendrites in learning. However, due to technical challenges in data collection, little data is available for comparing the responses of apical dendrites to cell bodies over multiple days. Here we present a dataset collected through the Allen Institute Mindscope’s OpenScope program that addresses this need. This dataset comprises high-quality two-photon calcium imaging from the apical dendrites and the cell bodies of visual cortical pyramidal neurons, acquired over multiple days in awake, behaving mice that were presented with visual stimuli. Many of the cell bodies and dendrite segments were tracked over days, enabling analyses of how their responses change over time. This dataset allows neuroscientists to explore the differences between apical and somatic processing and plasticity.

Neural oscillations have been implicated in many different basic brain and cognitive processes. Oscillatory activity has been suggested to play a role in neural binding, and more recently in the maintenance of information in working memory. This latter work has focused primarily on oscillations in terms of providing a "code" in working memory. However, oscillations may additionally play a fundamental role in essential properties and behaviors that neuronal networks must exhibit in order to produce functional working memory. In the present work, we present a biologically plausible working memory model and demonstrate that specific types of stable oscillatory dynamics may play a critical role in facilitating properties of working memory, including transitions between different memory states and a multi-item working memory capacity. We also show these oscillatory dynamics may facilitate and provide an underlying mechanism to enable a range of different types of binding in the context of working memory. Author summaryWorking memory is a form of short-term memory that is limited in capacity to perhaps 3 -5 items. Various studies have shown that ensembles of neurons oscillate during working memory retention, and cross-frequency coupling (between, e.g., theta and gamma frequencies) has been conjectured as underlying the observed limited capacity. Binding occurs when different objects or concepts are associated with each other and can persist as working memory representations; neuronal synchrony has been hypothesized as the neural correlate. We propose a novel computational model of a network of oscillatory neuronal populations

It is known that the presence of calcium ions (Ca(2 + )) is necessary for the enterobacterial virus ΦX174 to inject its DNA into the host cell, and that some mutations in the major capsid proteins lead to better survivability at higher temperatures. Our goal in the current study is to determine the physical changes in both the wild-type and mutant virus due to the binding of Ca(2 + ). Thus, we performed molecular dynamics simulations of the ΦX174 major capsid protein complex with and without Ca(2 + ) bound. Our results show that binding of Ca(2 + ) leads to energetic and dynamical changes in the virus proteins. In particular, the results suggest that binding of Ca(2 + ) is energetically favorable and that the mutation leads to increased fluctuations of the protein complex (especially with the calcium ions bound to the complex), which may increase the rate of genome packaging and ejection for ΦX174.