In
this work, we have tested two different extended tight-binding
methods in the framework of the quantum chemistry electron ionization
mass spectrometry (QCEIMS) program to calculate electron ionization
mass spectra. The QCEIMS approach provides reasonable, first-principles
computed spectra, which can be directly compared to experiment. Furthermore,
it provides detailed insight into the reaction mechanisms of mass
spectrometry experiments. It sheds light upon the complicated fragmentation
procedures of bond breakage and structural rearrangements that are
difficult to derive otherwise. The required accuracy and computational
demands for successful reproduction of a mass spectrum in relation
to the underlying quantum chemical method are discussed. To validate
the new GFN2-xTB approach, we conduct simulations for 15 organic,
transition-metal, and main-group inorganic systems. Major fragmentation
patterns are analyzed, and the entire calculated spectra are directly
compared to experimental data taken from the literature. We discuss
the computational costs and the robustness (outliers) of several calculation
protocols presented. Overall, the new, theoretically more sophisticated
semiempirical method GFN2-xTB performs well and robustly for a wide
range of organic, inorganic, and organometallic systems.
Mass spectrometry
(MS) is a powerful tool in chemical research
and substance identification. For the computational modeling of electron
ionization MS, we have developed the quantum-chemical electron ionization
mass spectra (QCEIMS) program. Here, we present an extension of QCEIMS
to calculate collision-induced dissociation (CID) spectra. The more
general applicability is accounted for by the new name QCxMS, where
“x” refers to EI or CID. To this end, fragmentation
and rearrangement reactions are computed “on-the-fly”
in Born–Oppenheimer molecular dynamics (MD) simulations with
the semiempirical GFN2-xTB Hamiltonian, which provides an efficient
quantum mechanical description of all elements up to Z = 86 (Rn). Through the explicit modeling of multicollision processes
between precursor ions and neutral gas atoms as well as temperature-induced
decomposition reactions, QCxMS provides detailed insight into the
collision kinetics and fragmentation pathways. In combination with
the CREST program to determine the preferential protonation sites,
QCxMS becomes the first standalone MD-based program that can predict
mass spectra based solely on molecular structures as input. We demonstrate
this for six organic molecules with masses ranging from 159 to 296
Da, for which QCxMS yields CID spectra in reasonable agreement with
experiments.
The crystal structure of 3R-LiTiS 2 was studied with combined experimental and theoretical approaches. The 3R polymorph of lithium titanium disulfide crystallizes rhombohedrally in the wellknown NaCrS 2 type with lattice parameters a = 352.98(1) pm, c = 1807.51(3) pm. The relative stability of 3R-LiTiS 2 with respect to
In organic mass spectrometry, fragment ions provide important information on the analyte as a central part of its structure elucidation. With increasing molecular size and possible protonation sites, the potential energy surface (PES) of the analyte can become very complex, which results in a large number of possible fragmentation patterns. Quantum chemical (QC) calculations can help here, enabling the fast calculation of the PES and thus enhancing the mass spectrometry-based structure elucidation processes. In this work, the previously unknown fragmentation pathways of the two drug molecules Nateglinide (45 atoms) and Zopiclone (51 atoms) were investigated using a combination of generic formalisms and calculations conducted with the Quantum Chemical Mass Spectrometry (QCxMS) program. The computations of the de novo fragment spectra were conducted with the semi-empirical GFNn-xTB (n = 1, 2) methods and com-pared against Orbitrap measured electrospray ionization (ESI) spectra in positive ion mode. It was found that the unbiased QC calculations are particularly suitable to predict nonevident fragment ion structures, sometimes contrasting the accepted generic formulation of fragment ion structures from electron migration rules, where the "true" ion fragment structures are approximated. For the first time, all fragment and intermediate structures of these large-sized molecules could be elucidated completely and routinely using this merger of methods, finding new undocumented mechanisms, that are not considered in common rules published so far. Given the importance of ESI for medicinal chemistry, pharmacokinetics, and metabolomics, this approach can significantly enhance the mass spectrometry-based structure elucidation processes and contribute to the understanding of previously unknown fragmentation pathways.
C4F7N and C5F10O are the most promising SF6 alternatives as eco-friendly insulating gase-ous mediums in electrical engineering. It is necessary to clarify their electrical stability and decomposition mecha-nisms. In this...
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