Predation is a dominant structuring force in ecosystems, but its effects are almost always measured in the ecosystem of the predator. However, the effects of predators can potentially extend across ecosystem boundaries during ontogenetic niche shifts in prey. We compared the effects of fish predation on benthic versus emerging aquatic insects, and hypothesized that the relative effects of fish on these two stages of prey are mediated by fish foraging strategy (benthic versus water‐column feeders). Benthic‐feeding smallmouth buffalo reduced benthic insect biomass in the freshwater ecosystem by 89%, and reduced insect emergence to the terrestrial ecosystem by 65%. In contrast, water‐column feeding sunfish had no effect on benthic biomass in the freshwater ecosystem, but reduced emergence to the terrestrial ecosystem by 44% relative to the fishless control. When smallmouth and sunfish were combined in a substitutive design that kept total fish density the same as the single species treatments, their effects on benthic insects (50% reduction) were weaker than expected based on predictions from the single species treatments. In contrast, their combined effects on emergence (46% reduction) were additive. Tetragnathid spider densities increased during peak emergence, but did not respond to changes in emergence among treatments. These results demonstrate that the effects of fish on prey flux to the terrestrial ecosystem are not the same as their effects on benthic prey biomass in the aquatic ecosystem, and that this difference is likely mediated by foraging strategy.

The floodplains of large rivers have been heavily modified due to riparian development and channel modifications, both of which can eliminate shallow off-channel habitats. The importance of these habitats for aquatic organisms like fishes is well studied. However, loss of off-channel habitat also eliminates habitats for the production of emerging aquatic insects, which subsidize riparian consumers in terrestrial food webs. We used field collections of insect emergence, historical mapping, and statistical modeling to estimate the loss of insect emergence due to channel modifications along eight segments of the Missouri River (USA), encompassing 1566 river km, between 1890 and 2012. We estimate annual production of emerging aquatic insects declined by a median of 36,000 kgC (95% CrI: 3000 to 450,000) between 1890 and 2012 (a 34% loss), due to the loss of surface area in backwaters and related off-channel habitats. Under a conservative assumption that riparian birds obtain 24% of their annual energy budget from adult aquatic insects, this amount of insect loss would be enough to subsidize approximately 790,000 riparian woodland birds during the breeding and nesting period (May to August; 95% CrI: 57,000 to 10,000,000). Most of the loss is concentrated in the lower reaches of the Missouri River, which historically had a wide floodplain, a meandering channel, and a high density of off-channel habitats, but which were substantially reduced due to channelization and bank stabilization. Our results indicate that the loss of off-channel habitats in large river floodplains has the potential to substantially affect energy availability for riparian insectivores, further demonstrating the importance of maintaining and restoring these habitats for linked aquatic-terrestrial ecosystems.