1. The identification and development of locally significant conservation actions require comprehensive and current ecological species information. Logistically this can be difficult, especially when studying rare and cryptic species which are at greater risk of becoming extinct. This study investigated the current distribution and density of the estuarine pipefish Syngnathus watermeyeri, the only Critically Endangered pipefish in the world, and the commonly found longsnout pipefish Syngnathus temminckii.2. Pipefish were surveyed using a seine net in the Kariega, Bushmans, Kasouga and Kleinemonde East and West estuaries, located on the south coast of South Africa, in October 2019, March 2020 and July 2020. The habitat and physico-chemical characteristics of each site were measured to determine whether these factors had an effect on the presence of S. watermeyeri. In addition, available habitat extent within the Bushmans and Kariega estuaries was mapped.3. Pipefish were only detected in two of the five estuaries within the historical range of S. watermeyeri and a total of 59 S. watermeyeri and 45 S. temminckii were found across all three surveys. Zostera capensis and Codium sp. were the dominant submerged vegetation within the Bushmans and Kariega estuaries and the presence of pipefish was positively associated with the availability of vegetation, especially Codium sp. 4. This is the most extensive targeted survey for S. watermeyeri to date, both temporally and spatially, and provides important insights into what threatens this species. This information should be used to inform future IUCN Red List assessments and the development of locally significant conservation actions.

At the start of the 21st century, a coastal residential-estate marina was developed on a previously degraded and polluted brownfield island site within Knysna estuarine bay, Garden Route National Park, South Africa, including the creation of 25 ha of new flow-through tidal canals. Canals near the larger entrance to this system now support permanently submerged beds of seagrass, which in turn support abundant macrobenthic invertebrates. In comparison with equivalent seagrass-associated assemblages present in natural channels around the island, those in the artificial marina canals were similarly structured and dominated by the same species, but the marina assemblages were significantly more species-rich (1.4 x on average) and were more abundant. Indeed, this area of marina supports the richest seagrass-associated macrofaunal biodiversity yet recorded from South Africa. The canals created de novo therefore now form a valuable addition to the bay’s marine habitat, in marked contrast to the generality that marinas developed on greenfield sites represent a net reduction in intertidal and shallow marine area and associated seagrass-associated benthos. If located and constructed appropriately, brownfield marina development and conservation of coastal marine biodiversity clearly need not be antithetical, and brownfield sites may provide opportunity for the location and management of ‘artificial marine micro-reserves’ or for the action of ‘other effective area-based conservation measures’ for soft-sediment faunas.

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