Domestic apple (Malus pumila)-and hawthorn (Crataegus sp.)-infesting races of Rhagoletis pomonella, Walsh (Diptera: Tephritidae) provide an excellent model to examine the role that host plant specificity plays during sympatric speciation (i.e., divergence in the absence of geographic isolation). Previous work has shown that these races differ in their propensities to accept apple and hawthorn fruits in behavioral choice assays, and that this discrimination translates into ''host fidelity'' in the field (i.e., apple flies tend to mate on and oviposit into apples and hawthorn flies on hawthorns).We present the results of a study examining possible physiological factors contributing to host choice differences in R. pomonella. We tested whether apple and hawthorn flies differ in their electroantennogram (EAG) responses to biologically relevant volatile compounds emitted from apples and hawthorns. Significant differences were found in the relative EAG responses of apple and hawthorn flies to host fruit compounds at five of six paired study sites across the eastern United States. The geographic pattern of EAG variation was complex, however, with local populations of apple and hawthorn flies tending to be more similar to one another than to flies of the same race at distant sites. This pattern was largely due to EAG responses for several compounds showing longitudinal or latitudinal clines, the latitudinal clines being similar to those observed for allozyme loci in the host races. We also found evidence for sex-related differences, as males tended to have higher mean EAG responses to compounds than females. Host-associated differences were therefore nested within geographic and sex-related differentiation in R. pomonella.Further behavioral studies are needed to distinguish whether the EAG differences are responsible for, as opposed to being a consequence of, host-plant fidelity and adaptation. Crosses are also required to establish a genetic basis for the EAG responses, although we did find significant correlations between EAG scores for several compounds and the allozymes NADH-Diaphorase-2 and Hydroxyacid dehydrogenase at one of the study sites. Questions therefore remain concerning the evolutionary significance of the EAG response differences between apple and hawthorn fly races. Nevertheless, these differences raise the possibility that antennal responses to fruit-related volatile compounds contribute to host plant discrimination in R. pomonella. Regardless, the EAG responses represent another set of traits, in addition to diapause/eclosion time phenotypes and allozyme frequencies, differing between apple and hawthorn host races of R. pomonella.