In this paper, we derive discrete transparent boundary conditions for a class of linearized Boussinesq equations. These conditions happen to be non-local in time and we test numerically their accuracy with a Crank-Nicolson time-discretization on a staggered grid. We use the derived transparent boundary conditions as interface conditions in a domain decomposition method, where they become local in time. We analyze numerically their efficiency thanks to comparisons made with other interface conditions.