The Asian tiger mosquito, Aedes albopictus, is an invasive vector mosquito of substantial public health concern. The large genome size (~1.19–1.28 Gb by cytofluorometric estimates), comprised of ~68% repetitive DNA sequences, has made it difficult to produce a high-quality genome assembly for this species. We constructed a high-density linkage map for Ae. albopictus based on 111,328 informative SNPs obtained by RNAseq. We then performed a linkage-map anchored reassembly of AalbF2, the genome assembly produced by Palatini et al. (2020). Our reassembled genome sequence, AalbF3, represents several improvements relative to AalbF2. First, the size of the AalbF3 assembly is 1.45 Gb, almost half the size of AalbF2. Furthermore, relative to AalbF2, AalbF3 contains a higher proportion of complete and single-copy BUSCO genes (84.3%) and a higher proportion of aligned RNAseq reads that map concordantly to a single location of the genome (46%). We demonstrate the utility of AalbF3 by using it as a reference for a bulk-segregant-based comparative genomics analysis that identifies chromosomal regions with clusters of candidate SNPs putatively associated with photoperiodic diapause, a crucial ecological adaptation underpinning the rapid range expansion and climatic adaptation of A. albopictus.

7Monarch butterfly (Danaus plexippus) decline over the past 25 years has received 8 considerable public and scientific attention, in large part because its decline, and that of its 9 milkweed (Asclepias spp.) host plant, have been linked to genetically modified (GM) crops 10 and the associated herbicide use. Therefore, the monarch has emerged as a poster child for 11 the anti-GM movement. Here we use museum and herbaria specimens to extend our 12 knowledge of the dynamics of both monarchs and milkweeds in the United States to more 13 than a century, from 1900-2016. We show that monarch population trends closely follow 14 those of their milkweed hosts; that both monarchs and milkweeds increased during the 15 early 20th century, and that recent declines are actually part of a much longer term decline 16 in both monarchs and milkweed beginning around 1950. Herbicide resistant crops, 17 therefore, are clearly not the only culprit, and likely not even the primary culprit, as these 18 declines began decades before GM crops were introduced. 19

The Aphnaeinae (Lepidoptera: Lycaenidae) are a largely African subfamily of 278 described species that exhibit extraordinary life-history variation. The larvae of these butterflies typically form mutualistic associations with ants, and feed on a wide variety of plants, including 23 families in 19 orders. However, at least one species in each of 9 of the 17 genera is aphytophagous, parasitically feeding on the eggs, brood or regurgitations of ants. This diversity in diet and type of symbiotic association makes the phylogenetic relations of the Aphnaeinae of particular interest. A phylogenetic hypothesis for the Aphnaeinae was inferred from 4.4 kb covering the mitochondrial marker COI and five nuclear markers (wg, H3, CAD, GAPDH and EF1 ) for each of 79 ingroup taxa representing 15 of the 17 currently recognized genera, as well as three outgroup taxa. Maximum Parsimony, Maximum Likelihood and Bayesian Inference analyses all support Heath's systematic revision of the clade based on morphological characters. Ancestral range inference suggests an African origin for the subfamily with a single dispersal into Asia. The common ancestor of the aphnaeines likely associated with myrmicine ants in the genus Crematogaster and plants of the order Fabales.