Materials and Methods Figs. S1 to S3 Table S1 References S1 SUPPORTING MATERIAL Materials and Methods Preparation of Re I (CO) 3 (dmp)(H 124)|(W 122)|AzCu I Mutant azurins were expressed and Re I (CO) 3 (dmp)(H 124)|(W 122)|AzCu I was prepared using previously published protocols (S1,S2). Crystal Structure of Re I (CO) 3 (dmp)(H 124)|(W 122)|AzCu II Crystals of Re(4,7-dimethyl-1,10-phenanthroline)(CO) 3 (H 124){T 124 H|K 122 W|H 83 Q}(Cu II)azurin (Re I (CO) 3 (dmp)(H 124)|(W 122)|AzCu II ; space group I222, cell dimensions 63.22 × 69.08 × 68.94 Å 3 ; α = β = γ = 90.00°, one molecule per asymmetric unit) grew from 4 μL drops made from equal volumes of 30 mg/mL Re I (CO) 3 (dmp)(H 124)|(W 122)|AzCu II in 25 mM HEPES pH 7.5 and reservoir by vapor diffusion. The drops were equilibrated against 500 μL of reservoir

Electron coupling through a beta strand has been investigated by measurement of the intramolecular electron-transfer (ET) rates in ruthenium-modified derivatives of the beta barrel blue copper protein Pseudomonas aeruginosa azurin. Surface histidines, introduced on the methionine-121 beta strand by mutagenesis, were modified with a Ru(2,2'-bipyridine)2(imidazole)2+ complex. The Cu+ to Ru3+ rate constants yielded a distance-decay constant of 1.1 per angstrom, a value close to the distance-decay constant of 1.0 per angstrom predicted for electron tunneling through an idealized beta strand. Activationless ET rate constants in combination with a tunneling-pathway analysis of the structures of azurin and cytochrome c confirm that there is a generally efficient network for coupling the internal (native) redox center to the surface of both proteins.

Subunit IV of yeast cytochrome oxidase is made in the cytoplasm with a transient pre‐sequence of 25 amino acids which is removed upon import of the protein into mitochondria. To study the function of this cleavable pre‐sequence in mitochondrial protein import, three peptides representing 15, 25 or 33 amino‐terminal residues of the subunit IV precursor were chemically synthesized. All three peptides were freely soluble in aqueous buffers, yet inserted spontaneously from an aqueous subphase into phospholipid monolayers up to an extrapolated limiting monolayer pressure of 40‐50 mN/m. The two longer peptides also caused disruption of unilamellar liposomes. This effect was increased by a diffusion potential, negative inside the liposomes, and decreased by a diffusion potential of opposite polarity. The peptides, particularly the two longer ones, also uncoupled respiratory control of isolated yeast mitochondria. The 25‐residue peptide had little secondary structure in aqueous buffer but became partly alpha‐helical in the presence of detergent micelles. Based on the amino acid sequence of the peptides, a helical structure would have a highly asymmetric distribution of charged and apolar residues and would be surface active. Amphiphilic helicity appears to be a general feature of mitochondrial pre‐sequences. We suggest that this feature plays a crucial role in transporting proteins into mitochondria.

Electron transfers in photosynthesis and respiration commonly occur between protein-bound prosthetic groups that are separated by large molecular distances (often greater than 10 A Ê ). Although the electron donors and acceptors are expected to be weakly coupled, the reactions are remarkably fast and proceed with high speci®city. Tunneling timetables based on analyses of Fe 2 /Cu to Ru 3 electron-transfer rates for Ru-modi®ed heme and copper proteins reveal that the structure of the intervening polypeptide can control these distant donor±acceptor couplings. Multistep tunneling can account for the relatively rapid Cu to Re 2 electron transfer observed in Re-modi®ed azurin.

A protein analog of a purple copper center has been constructed from a recombinant blue copper protein (Pseudomonas aeruginosa azurin) by replacing the loop containing the three ligands to the blue copper center with the corresponding loop of the CUA center in cytochrome c oxidase (COX) from Paracoccus denitrificans. The electronic absorption in the UV and visible region (UV-vis) and electron paramagnetic resonance (EPR) spectra of this analog are remarkably similar to those of the native CUA center in COX from Paracoccus denitrificans. The above spectra can be obtained upon addition of a mixture of Cu2l and Cu+. Addition of Cu2l only results in a UV-vis spectrum consisting of absorptions from both a purple copper center and a blue copper center. This spectrum can be converted to the spectrum of a pure purple copper by a prolonged incubation in the air, or by addition of excess ascorbate. The azurin mutant reported here is an example of an engineered purple copper center with the A480/A530 ratio greater than 1 and with no detectable hyperfines, similar to those of the CUA sites in COX of bovine heart and of Paracoccus denitrificans.