SUMMARYdeployment supporting VOs requires the addition of a new VO service component allowing VOs to manage their own membership and control access to their distributed resources. The myVocs system can be integrated with Grid authentication and authorization using GridShib.
This paper documents the experience improving the performance of a data processing work ow for analysis of the Human Connectome Project's HCP900 data set. It describes how network and compute bottlenecks were discovered and resolved during the course of a science engagement. A series of computational enhancements to the stock FSL BedpostX work ow are described. These enhancements migrated the work ow from a slow serial execution of computations resulting from Slurm scheduler incompatibilities to eventual execution on GPU resources, going from a 21-day execution on a single CPU core to a 2 hour execution on a GPU. This work ow contributed a vital use-case to the build-out of the campus compute cluster with additional GPUs and resulted in enhancements to network bandwidth. It also shares insights on potential improvements to distribution of scienti c software to avoid stagnation in site-speci c deployment decisions. The discussion highlights the advantages of open licenses and popular code collaboration sites like GitHub.com in feeding contributions upstream.
KEYWORDSSlurm batch scheduler, high performance computing, GPU, research support ACM Reference format:
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