The reproducibility of machine-learning analyses in computational psychiatry is a growing concern. In a multimodal neuropsychiatric dataset of antipsychotic-naïve, first-episode schizophrenia patients, we discuss a workflow aimed at reducing bias and overfitting by invoking simulated data in the design process and analysis in two independent machine-learning approaches, one based on a single algorithm and the other incorporating an ensemble of algorithms. We aimed to (1) classify patients from controls to establish the framework, (2) predict short-and long-term treatment response, and (3) validate the methodological framework. We included 138 antipsychotic-naïve, firstepisode schizophrenia patients with data on psychopathology, cognition, electrophysiology, and structural magnetic resonance imaging (MRI). Perinatal data and long-term outcome measures were obtained from Danish registers. Shortterm treatment response was defined as change in Positive And Negative Syndrome Score (PANSS) after the initial antipsychotic treatment period. Baseline diagnostic classification algorithms also included data from 151 matched controls. Both approaches significantly classified patients from healthy controls with a balanced accuracy of 63.8% and 64.2%, respectively. Post-hoc analyses showed that the classification primarily was driven by the cognitive data. Neither approach predicted short-nor long-term treatment response. Validation of the framework showed that choice of algorithm and parameter settings in the real data was successfully guided by results from the simulated data. In conclusion, this novel approach holds promise as an important step to minimize bias and obtain reliable results with modest sample sizes when independent replication samples are not available.
Preparing thermal states on a quantum computer can have a variety of applications, from simulating many-body quantum systems to training machine learning models. Variational circuits have been proposed for this task on near-term quantum computers, but several challenges remain, such as finding a scalable cost-function, avoiding the need of purification, and mitigating noise effects. We propose a new algorithm for thermal state preparation that tackles those three challenges by exploiting the noise of quantum circuits. We consider a variational architecture containing a depolarizing channel after each unitary layer, with the ability to directly control the level of noise. We derive a closed-form approximation for the free-energy of such circuit and use it as a cost function for our variational algorithm. By evaluating our method on a variety of Hamiltonians and system sizes, we find several systems for which the thermal state can be approximated with a high fidelity. However, we also show that the ability for our algorithm to learn the thermal state strongly depends on the temperature: while a high fidelity can be obtained for high and low temperatures, we identify a specific range for which the problem becomes more challenging. We hope that this first study on noise-assisted thermal state preparation will inspire future research on exploiting noise in variational algorithms.
Purpose The purpose of this study was to investigate seasonal variation in cases of biopsy‐proven GCA in eastern Denmark in a 29‐year period. Methods Pathology records of all temporal artery biopsies in eastern Denmark between 1990 and 2018 were reviewed. For each patient, data were collected which included age, sex, date of birth and biopsy result. Seasonality was evaluated using logistic regression and Poisson regression analysis. Lastly, an explorative pilot study was conducted to investigate a possible association between three weather parameters (average temperature, amount of rain and hours of sunshine) and the biopsy outcome. Results One thousand three hundred twenty‐three biopsies were included of which 336 fulfilled objective criteria for GCA diagnosis. Mean age at diagnosis was 75.6 years (range 52–94 years). Among the biopsy‐proven cases of GCA, there were 223 women (66.3%, mean age 76.2 years) and 113 men (33.7%, mean age 74.4 years) giving a female to male ratio of 1.97:1. The peak occurrence of GCA was in the 70–79 years age group. Statistical analysis of seasonal variation showed an increased risk of a positive biopsy during summer compared to autumn (p = 0.037). No association between the three weather parameters and the biopsy outcome was found. Conclusion In this study of biopsy‐proven GCA in a large Danish patient cohort, the occurrence of GCA showed seasonal variation with higher occurrence in the summer months when compared to autumn. Future studies pooling all cases of GCA worldwide are needed to determine seasonality in the occurrence of GCA.
Preparing thermal states on a quantum computer can have a variety of applications, from simulating many-body quantum systems to training machine learning models. Variational circuits have been proposed for this task on near-term quantum computers, but several challenges remain, such as finding a scalable cost-function, avoiding the need of purification, and mitigating noise effects. We propose a new algorithm for thermal state preparation that tackles those three challenges by exploiting the noise of quantum circuits. We consider a variational architecture containing a depolarizing channel after each unitary layer, with the ability to directly control the level of noise. We derive a closed-form approximation for the free-energy of such circuit and use it as a cost function for our variational algorithm. By evaluating our method on a variety of Hamiltonians and system sizes, we find several systems for which the thermal state can be approximated with a high fidelity. However, we also show that the ability for our algorithm to learn the thermal state strongly depends on the temperature: while a high fidelity can be obtained for high and low temperatures, we identify a specific range for which the problem becomes more challenging. We hope that this first study on noise-assisted thermal state preparation will inspire future research on exploiting noise in variational algorithms.
Bayesian optimization (BO) is a popular method for black-box optimization, which relies on uncertainty as part of its decision-making process when deciding which experiment to perform next. However, not much work has addressed the effect of uncertainty on the performance of the BO algorithm and to what extent calibrated uncertainties improve the ability to find the global optimum. In this work, we provide an extensive study of the relationship between the BO performance (regret) and uncertainty calibration for popular surrogate models and compare them across both synthetic and real-world experiments. Our results confirm that Gaussian Processes are strong surrogate models and that they tend to outperform other popular models. Our results further show a positive association between calibration error and regret, but interestingly, this association disappears when we control for the type of model in the analysis. We also studied the effect of re-calibration and demonstrate that it generally does not lead to improved regret. Finally, we provide theoretical justification for why uncertainty calibration might be difficult to combine with BO due to the small sample sizes commonly used.Uncertainty also plays a central role Bayesian Optimization (BO) (Snoek et al., 2012), which will be the focus of this paper. As a sequential design strategy for global optimization, BO has several applications with perhaps the most popular ones being general experimental design (Shahriari et al., 2015) and model selection for machine learning
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