ZFIN, the Zebrafish Model Organism Database, http://zfin.org, serves as the central repository and web-based resource for zebrafish genetic, genomic, phenotypic and developmental data. ZFIN manually curates comprehensive data for zebrafish genes, phenotypes, genotypes, gene expression, antibodies, anatomical structures and publications. A wide-ranging collection of web-based search forms and tools facilitates access to integrated views of these data promoting analysis and scientific discovery. Data represented in ZFIN are derived from three primary sources: curation of zebrafish publications, individual research laboratories and collaborations with bioinformatics organizations. Data formats include text, images and graphical representations. ZFIN is a dynamic resource with data added daily as part of our ongoing curation process. Software updates are frequent. Here, we describe recent additions to ZFIN including (i) enhanced access to images, (ii) genomic features, (iii) genome browser, (iv) transcripts, (v) antibodies and (vi) a community wiki for protocols and antibodies.

ZFIN, the Zebrafish Model Organism Database (http://zfin.org), is the central resource for zebrafish genetic, genomic, phenotypic and developmental data. ZFIN curators manually curate and integrate comprehensive data involving zebrafish genes, mutants, transgenics, phenotypes, genotypes, gene expressions, morpholinos, antibodies, anatomical structures and publications. Integrated views of these data, as well as data gathered through collaborations and data exchanges, are provided through a wide selection of web-based search forms. Among the vertebrate model organisms, zebrafish are uniquely well suited for rapid and targeted generation of mutant lines. The recent rapid production of mutants and transgenic zebrafish is making management of data associated with these resources particularly important to the research community. Here, we describe recent enhancements to ZFIN aimed at improving our support for mutant and transgenic lines, including (i) enhanced mutant/transgenic search functionality; (ii) more expressive phenotype curation methods; (iii) new downloads files and archival data access; (iv) incorporation of new data loads from laboratories undertaking large-scale generation of mutant or transgenic lines and (v) new GBrowse tracks for transgenic insertions, genes with antibodies and morpholinos.

Considerable attention has been focused on the role of gullies as a contributor to contemporary sediment loads of rivers in Australia. In southern Australia rapid acceleration of hillslope gully erosion has been widely documented in the postEuropean period (~ last 200 years). In the northern Australian tropics, however, gully erosion processes operating along alluvial plains have not been well documented and can differ substantially from those gullies eroding into colluvium on hillslopes. Aerial reconnaissance surveys in 2004 along 13 500 km of the main stem rivers that drain into the Gulf of Carpentaria (GoC), identifi ed extensive areas of alluvial lands that have been impacted by a pervasive form of gully erosion. More detailed remote sensing based mapping within the 31 000 km 2 Mitchell River fl uvial megafan has identifi ed that active gullying into alluvium occupies ~ 0·4% (129 km 2 ) of the lower Mitchell catchment. These alluvial gullies are concentrated along main drainage channels and their scarp heights are highly correlated to the local relief between the fl oodplain and river thalweg. While river incision into the megafan since the Pleistocene has developed the relief potential for erosion, other factors such as fl oodplain hydrology, soil dispersibility, and vegetation also infl uence the distribution of gullies. In this paper we present a conceptual model of alluvial gullies, and contend that they represent a distinct end member in the continuum of gully forms that have been described in the geomorphic literature. An understanding of the processes driving this form of alluvial gullying can only be gained when they are differentiated from widely described colluvial hillslope gully models and theories. We present evidence of type examples of alluvial gullying in the Mitchell, and through analysis of their distribution and morphology at different scales, highlight some of the key mechanisms that are potentially initiating these features and driving their expansion.

The Zebrafish Information Network (ZFIN, http://zfin.org), the model organism database for zebrafish, provides the central location for curated zebrafish genetic, genomic and developmental data. Extensive data integration of mutant phenotypes, genes, expression patterns, sequences, genetic markers, morpholinos, map positions, publications and community resources facilitates the use of the zebrafish as a model for studying gene function, development, behavior and disease. Access to ZFIN data is provided via web-based query forms and through bulk data files. ZFIN is the definitive source for zebrafish gene and allele nomenclature, the zebrafish anatomical ontology (AO) and for zebrafish gene ontology (GO) annotations. ZFIN plays an active role in the development of cross-species ontologies such as the phenotypic quality ontology (PATO) and the gene ontology (GO). Recent enhancements to ZFIN include (i) a new home page and navigation bar, (ii) expanded support for genotypes and phenotypes, (iii) comprehensive phenotype annotations based on anatomical, phenotypic quality and gene ontologies, (iv) a BLAST server tightly integrated with the ZFIN database via ZFIN-specific datasets, (v) a global site search and (vi) help with hands-on resources.

[1] The relationship between the production of dimethylsulfide (DMS) in the upper ocean and atmospheric sulfate aerosols has been confirmed through local shipboard measurements, and global modeling studies alike. In order to examine whether such a connection may be recoverable in the satellite record, we have analyzed the correlation between mean surface chlorophyll (CHL) and aerosol optical depth (AOD) in the Southern Ocean, where the marine atmosphere is relatively remote from anthropogenic and continental influences. We carried out the analysis in 5-degree zonal bands between 50°S and 70°S, for the period (1997)(1998)(1999)(2000)(2001)(2002)(2003)(2004), and in smaller meridional sectors in the Eastern Antarctic, Ross and Weddell seas. Seasonality is moderate to strong in both CHL and AOD signatures throughout the study regions. Coherence in the CHL and AOD time series is strong in the band between 50°S and 60°S, however this synchrony is absent in the sea-ice zone (SIZ) south of 60°S. Marked interannual variability in CHL occurs south of 60°S, presumably related to variability in sea-ice production during the previous winter. We find a clear latitudinal difference in the cross correlation between CHL and AOD, with the AOD peak preceding the CHL bloom by up to 6 weeks in the SIZ. This suggests that substantial trace gas emissions (aerosol precursors) are being produced over the SIZ in spring (October-December) as sea ice melts. This hypothesis is supported by field data that record extremely high levels of sulfur species in sea ice, surface seawater, and the overlying atmosphere during ice melt.Citation: Gabric, A. J., J. M. Shephard, J. M. Knight, G. Jones, and A. J. Trevena (2005), Correlations between the satellite-derived seasonal cycles of phytoplankton biomass and aerosol optical depth in the Southern Ocean: Evidence for the influence of sea ice, Global Biogeochem. Cycles, 19, GB4018,