Background Standard evolutionary theories of aging postulate that reduced extrinsic mortality leads to evolution of longevity. Clownfishes of the genus Amphiprion live in a symbiotic relationship with sea anemones that provide protection from predators. We performed a survey and identified at least two species with a lifespan of over 20 years. Given their small size and ease of captive reproduction, clownfish lend themselves as experimental models of exceptional longevity. To identify genetic correlates of exceptional longevity, we sequenced the transcriptomes of Amphiprion percula and A. clarkii and performed a scan for positively-selected genes (PSGs). Results The PSGs that we identified in the last common clownfish ancestor were compared with PSGs detected in long-lived mole rats and short-lived killifishes revealing convergent evolution in processes such as mitochondrial biogenesis. Among individual genes, the Mitochondrial Transcription Termination Factor 1 ( MTERF1 ), was positively-selected in all three clades, whereas the Glutathione S-Transferase Kappa 1 ( GSTK1 ) was under positive selection in two independent clades. For the latter, homology modelling strongly suggested that positive selection targeted enzymatically important residues. Conclusions These results indicate that specific pathways were recruited in independent lineages evolving an exceptionally extended or shortened lifespan and point to mito-nuclear balance as a key factor. Electronic supplementary material The online version of this article (10.1186/s12862-019-1409-0) contains supplementary material, which is available to authorized users.
We investigate synchronization patterns and chimera-like states in the modular multilayer topology of the connectome of Caenorhabditis elegans. In the special case of a designed network with two layers, one with electrical intra-community links and one with chemical inter-community links, chimera-like states are known to exist. Aiming at a more biological approach based on the actual connectivity data, we consider a network consisting of two synaptic (electrical and chemical) and one extrasynaptic (wireless) layers. Analyzing the structure and properties of this layered network using Multilayer-Louvain community detection, we identify modules whose nodes are more strongly coupled with each other than with the rest of the network. Based on this topology, we study the dynamics of coupled Hindmarsh-Rose neurons. Emerging synchronization patterns are quantified using the pairwise Euclidean distances between the values of all oscillators, locally within each community and globally across the network. We find a tendency of the wireless coupling to moderate the average coherence of the system: for stronger wireless coupling, the levels of synchronization decrease both locally and globally, and chimera-like states are not favored. By introducing an alternative method to define meaningful communities based on the dynamical correlations of the nodes, we obtain a structure that is dominated by two large communities. This promotes the emergence of chimera-like states and allows to relate the dynamics of the corresponding neurons to biological neuronal functions such as motor activities.
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