Bats have long been associated with multiple pathogens, including viruses affecting humans such as henipaviruses, filoviruses, bunyaviruses and coronaviruses. The alpha and beta coronaviruses genera can infect most mammalian species. Among them, betacoronavirus SARS-CoV, MERS-CoV and SARS-CoV-2, which have caused the three major pandemics in the last two decades, have been proposed to originate in bats. In this study, 194 oral swabs from 22 bats species sampled in 19 locations of the Iberian Peninsula were analysed and characterized by three different PCR tests (coronavirus generic real-time RT-PCR, multiplex conventional PCR, and SARS-CoV-2 specific real-time RT-PCR) to detect bat coronaviruses. Screening with coronavirus generic PCR showed 102 positives out of 194 oral swabs analysed. Then, metabarcoding with multiplex PCR amplified 15 positive samples. Most of the coronaviruses detected in this study belong to alphacoronavirus (α-CoV) genus, with multiple alphacoronaviruses identified by up to five different genetic variants coexisting in the same bat. One of the positive samples identified in a Miniopterus schreibersii bat positive for the generic coronavirus PCR and the specific SARS-CoV-2 PCR was classified as betacoronavirus (-CoV) through phylogenetic analysis. These results support the rapid evolution of coronaviruses to generate new genomic potentially pathogenic variants likely through co-infection and recombination.

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Long-term studies of community composition and relative abundance are key tools in wildlife management and biodiversity conservation. However, few studies of this kind are available for Mediterranean carnivores, especially in the Iberian Peninsula, a hotspot of mammal biodiversity in Europe. We used 15 years of carnivore monitoring data from the Doñana National Park, one of the most representative areas for carnivores in Iberia, to obtain population trends for the main Mediterranean carnivore species. They were positive for red fox, stable for badger and Egyptian mongoose, and negative for common genet and Iberian lynx. The importance of long-term datasets and the implications of the results for the studied species at global level are discussed, above all for species whose population trends are less well known. This is the case of the Egyptian mongoose, for which we present novel information on its long-term population trend in Europe, and of the Iberian lynx, an endangered species with a clear negative trend in this well-protected area.

Forest-dwelling bats are a poorly studied group in Iberia. Little information is available about their abundance, conservation status, and, for some regions, even their distribution. This is the case in the western sector of the Sistema Central mountain range, an interesting area from a biogeographical point of view that potentially could host rich bat communities. However, there is almost no published information about forest bats in the region. From 2017 to 2019 we carried out acoustic and mistnetting surveys in the province of Salamanca (Western Spain), intending to fill this gap in the faunistic knowledge of the area. Our work has revealed a very diverse bat community, reaching 19 species out of the 31 known in Iberia. We obtained new data for forest-specialist species, including many records of the rare Myotis bechsteinii, Barbastella barbastellus and Nyctalus lasiopterus. Most interestingly, we also found a high abundance of Myotis mystacinus which is rarely captured. This study provides novel information about the distribution, status, and ecology of bats in the forests of one western sector of Sistema Central and highlights the importance of the area for conserving these species in the Iberian context. The large number of new records emphasizes the lack of sampling in the region and the need to get better knowledge to develop informed management and conservation decisions.

Underground roosts play a key role in the conservation of cave-dwelling bats. In regions where natural roosts are scarce, human-made artificial roosts can host important populations of these species. The roosts studied in the present work are two railway tunnels abandoned in 1984 that have become one of the biggest cavedwelling bats roosts in the region. Several thousands of roosting bats were reported during summer in the 1990s, and more recently, in the mid-2010s, large groups of hibernating bats and maternity colonies were found in them (Lizana-Ciudad 2015, Hernández-Tabernero et al. 2016). Now, as a measure for local economic development, a hiking route following the railroad has been habilitated and it could threaten bat colonies if many visitors enter into the tunnels. In this work, we present the data of monthly monitoring carried out during 2018 and we propose conservation measures that would allow the coexistence of the touristic hiking route and the remarkable colonies of cave-dwelling bats that the tunnels host. This monitoring shows that the occupation of the roosts is very dynamic, with different species occupying each of them in different seasons. Overall, the longest tunnel is mainly a winter hibernaculum, while the shorter one is used as a breeding roost which hosts large colonies of bats. The most abundant species in the studied roosts were Miniopterus schreibersii, Rhinolophus ferrumequinum, Myotis myotis, and Myotis blythii. These roosts seem to be part of a large transnational network of underground roosts that are well known on the Portuguese side with very limited knowledge on the Spanish side. We hope by implementing simple measures, these roosts can be preserved whilst still maintaining the hiking route for visitor enjoyment and promoting the economic development of the area.