The human body is a chiral environment and many drugs are chiral and interact differently depending on the type of enantiomer. Therefore, the interest in analytical and preparative separations of enantiomers has steadily increased over the years. LC is today the most important technique in analytical laboratories worldwide. The key to understand the separation system lies in the adsorption isotherm, which describes the equilibrium distribution of solutes between the mobile and stationary phases. By measuring adsorption isotherms in chiral phase systems, a deeper interpenetration concerning enantioselective and non-selective binding energies and adsorption processes is possible. Furthermore, this data provides the core information needed to optimize preparative chromatographic processes for purification of single enantiomers. However, the measurement of adsorption isotherms is a delicate matter and there are many dangerous pitfalls that may produce erroneous results and even wrong mechanistic conclusions. This review summarizes the most relevant methods and a workflow will be given for avoiding the common pitfalls and obtaining reliable data. Several applications from the literature are also treated to give insight in what information can potentially be obtained from using this methodology.
The traditional approach for analyzing interaction data from biosensors instruments is
based on the simplified assumption that also larger biomolecules interactions are
homogeneous. It was recently reported that the human receptor angiotensin-converting
enzyme 2 (ACE2) plays a key role for capturing SARS-CoV-2 into the human target body,
and binding studies were performed using biosensors techniques based on surface plasmon
resonance and bio-layer interferometry. The published affinity constants for the
interactions, derived using the traditional approach, described a single interaction
between ACE2 and the SARS-CoV-2 receptor binding domain (RBD). We reanalyzed these data
sets using our advanced four-step approach based on an adaptive interaction distribution
algorithm (AIDA) that accounts for the great complexity of larger biomolecules and gives
a two-dimensional distribution of association and dissociation rate constants. Our
results showed that in both cases the standard assumption about a single interaction was
erroneous, and in one of the cases, the value of the affinity constant
K
D
differed more than 300% between the reported value and
our calculation. This information can prove very useful in providing mechanistic
information and insights about the mechanism of interactions between ACE2 and SARS-CoV-2
RBD or similar systems.
When
using biosensors, analyte biomolecules of several different
concentrations are percolated over a chip with immobilized ligand
molecules that form complexes with analytes. However, in many cases
of biological interest, e.g., in antibody interactions, complex formation
steady-state is not reached. The data measured are so-called sensorgram,
one for each analyte concentration, with total complex concentration
vs time. Here we present a new four-step strategy for more reliable
processing of this complex kinetic binding data and compare it with
the standard global fitting procedure. In our strategy, we first calculate
a dissociation graph to reveal if there are any heterogeneous interactions.
Thereafter, a new numerical algorithm, AIDA, is used to get the number
of different complex formation reactions for each analyte concentration
level. This information is then used to estimate the corresponding
complex formation rate constants by fitting to the measured sensorgram
one by one. Finally, all estimated rate constants are plotted and
clustered, where each cluster represents a complex formation. Synthetic
and experimental data obtained from three different QCM biosensor
experimental systems having fast (close to steady-state), moderate,
and slow kinetics (far from steady-state) were evaluated using the
four-step strategy and standard global fitting. The new strategy allowed
us to more reliably estimate the number of different complex formations,
especially for cases of complex and slow dissociation kinetics. Moreover,
the new strategy proved to be more robust as it enables one to handle
system drift, i.e., data from biosensor chips that deteriorate over
time.
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