Changes in the species composition and structural characteristics of marine vegetated habitats in response to climate change or local anthropogenic impacts may alter their quality as habitat for associated fish and invertebrates. Summer densities and biomass of the eelgrass, Zostera marina, declined significantly between 1985 and 2004 in Bogue Sound, North Carolina, USA, within the present‐day zone of biogeographic overlap in the distribution of this subtidal temperate species and the intertidal subtropical seagrass, Halodule wrightii. Zostera decline was associated with increased spring water temperatures and water nutrient concentrations. In contrast, Halodule did not exhibit a consistent trend of temporal change. Experimental seagrass transplants indicated that Halodule has the capacity to grow at depths greater than it currently occupies, suggesting that Halodule might, over time, replace Zostera. The abundance and diversity of infaunal invertebrates were lower in seagrass beds dominated by Halodule than in those dominated by Zostera or mixtures of the two species, suggesting that changing seagrass species composition affects associated faunal assemblages. Experimental deployment of artificial seagrass patches mimicking the structure of the two species showed that both depth and structural characteristics of seagrass explain differences in faunal assemblages. Epifaunal community structure differed significantly between structurally identical seagrass mimics deployed in intertidal and subtidal habitat, and invertebrates and fishes were significantly more abundant in artificial Zostera than Halodule patches at one of the two study sites. Synthesis of these results suggests that, in the event of continued Zostera loss, with or without replacement by Halodule, important habitat functions will be lost, and secondary productivity of these lagoonal ecosystems may significantly decrease.

Background Anthropized landscapes play a crucial role in biodiversity conservation, as they encompass about 90% of the remaining tropical forest. Effective conservation strategies require a deep understanding of how anthropic disturbances determine diversity patterns across these landscapes. Here, we evaluated how attributes and assembly mechanisms of dung beetle communities vary across the Selva El Ocote Biosphere Reserve (REBISO) landscape. Methods Community attributes (species diversity, abundance, and biomass) were assessed at the landscape scale, using spatial windows and vegetation classes. Windows were categorized as intact, variegated, or fragmented based on their percent cover of tropical forest. The vegetation classes analyzed were tropical forest, second-growth forest, and pastures. Results We collected 15,457 individuals and 55 species. Variegated windows, tropical forests, and second-growth forests showed the highest diversity values, while the lowest values were found in intact windows and pastures. Landscape fragmentation was positively and strongly related to dung beetle diversity and negatively related to their abundance; biomass was positively associated with forest cover. Beta diversity was the primary driver of the high dung beetle diversity in the landscape analyzed. Discussion The landscape heterogeneity and its biodiversity-friendly matrix facilitate the complementarity of dung beetle assemblages in the Selva El Ocote Biosphere Reserve. Random processes govern beta diversity patterns in intact and variegated windows. Therefore, vegetation cover in the region is sufficient to maintain a continuous flow of dung beetles between forested landscape segments. However, intense anthropic disturbances acted as deterministic environmental filters in fragmented windows and pastures sites, leading to biotic homogenization processes. Our results suggest that increasing habitat variegation in highly fragmented sites is an effective strategy to prevent or buffer homogenization processes in the REBISO landscape.

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1. Understanding how human-modified landscapes affect the phylogenetic composition and assembly mechanisms of biological communities is critical for effectively managing and restoring tropical ecosystems. We evaluated how forest coverage loss, fragmentation and landscape heterogeneity affect the phylogenetic diversity of dung beetles and their assembly mechanisms in Los Tuxtlas Biosphere Reserve, a protected but highly fragmented tropical landscape.2. We calculated Faith's phylogenetic diversity, mean pairwise phylogenetic distance and mean nearest taxon distance for 5,388 individuals in 36 species. The standardised effect sizes of these metrics were estimated to control their correlation with species richness. Phylogenetic diversity was also assessed separately for each dung beetle functional group. Finally, we compared the mean functional and phylogenetic pairwise distance and mean nearest taxon distance and measured the phylogenetic signal among dung beetle functional traits to determine the influence of niche conservatism on the phylogenetic structure of species assemblages.3. Faith's phylogenetic diversity of dung beetles was positively correlated with forest coverage, while their mean phylogenetic and nearest taxon distance values decreased with increasing landscape fragmentation. Necrophagous beetles and forest specialists responded most negatively to forest coverage loss and fragmentation. Alpha and beta diversity values showed phylogenetic overdispersion but func-tional convergence and weak phylogenetic signals in their functional traits, suggesting low niche conservatism. Landscapes with moderate forest coverage (≥40%) favoured higher phylogenetic beta diversity, whereas phylogenetic and functional beta diversity decreased significantly in landscapes with low forest coverage (<30%).5. Synthesis and applications. Forest habitats in fragmented landscapes are essential for safeguarding the evolutionary history of dung beetles, reducing biotic homogenisation processes by favouring phylogenetic overdispersion and complementarity between sites. Therefore, to secure the phylogenetic diversity of dung beetles within fragmented tropical reserves, we recommend protecting