International audienceThe distinction between cocrystals and salts is usually investigated in hydrogen-bonded systems as A?H···B ? [A]?···[H?B]+, where the position of the hydrogen atom actually defines the ionicity of the complex. The same distinction, but in halogen-bonded systems, is addressed here, in complexes formed out of N-iodoimide derivatives as halogen bond donors, and pyridines as halogen-bond acceptors, anticipating that the position of the iodine atom in these A?I···B ? [A]?···[I?B]+ systems will also define their degree of ionicity. We show that the crystalline halogen-bonded complexes of N-iodosuccinimide (NIS) with pyridine, 4-methylpyridine, and 4-dimethylaminopyridine can be described as ?close-to-neutral? cocrystals while the crystalline halogen-bonded complex of N-iodosaccharin (NISac) with 4-dimethylaminopyridine adopts a ?close-to-ionic? structure. Theoretical calculations were performed (i) in gas phase on isolated NIS···Py-NMe2 and NISac···Py-NMe2 complexes, and (ii) on the periodic crystal phases, and combined with the topological analysis of the electron density distribution ?(r). We demonstrate unambiguously that the crystal environment actually plays a crucial role in the stabilization of the ?close-to-ionic? structure of the NISac···Py-NMe2 complex. An external homogeneous electric field ε applied to this complex (all atoms frozen at the crystalline geometry, except iodine) in either gas phase (ε = 3.7 GV m?1) or periodic pseudo-isolated configuration (ε = 2.8 GV m?1) is able to shift the iodine atom at the crystal geometry, miming the polarization effect induced by the local crystal electric field. The strong influence of the crystalline environment on the iodine position is demonstrated by using plane wave DFT periodic calculations on optimized NIS·Py-NMe2 and NISac·Py-NMe2 crystal structures, as well as by applying this plane wave basis set formalism to a hypothetical solid where the halogen-bonded complexes are pushed apart from each other within a periodic syste
Chalcogen bonding has been investigated in terms of the electron density distribution ρ(r) around chalcogen atoms. The evolution of ρ(r) along the series of chalcogen atoms is shown based on ab initio calculations on chalcogenophthalic anhydrides C8O2H4Chal (Chal = O, S, Se, and Te), where the Chal atom is in its sp 3 hybridization. From a detailed analysis of the experimental and theoretical electron density and the L(r) = −∇2ρ(r) function in the crystal phase of C8O2H4Se, we characterize directionality and strength of chalcogen bonding (Se···O and Se···Se) and hydrogen bonding (Se···H) interactions. In addition, several isolated dimers and a trimer of C8O2H4Se have been also studied at the X-ray geometry in order to compare interaction energies with those estimated from the measured electron density. Similarly to halogen atoms in halogen bonding interactions, the anisotropic distribution of ρ(r) around the Chal atoms was found to be at the origin of chalcogen bonding. Therefore, the concepts, developed earlier for halogen bonding, are extended here to chalcogen bonding interactions. From the results of this work, the L(r) function proves to be more precise than the σ-hole concept to identify electrophilic sites of Se-atoms in sp 3 hybridization.
Halogen bonding interactions between halide anions and neutral polyiodinated linkers are used for the elaboration of anion organic frameworks, by analogy with well-known MOF derivatives. The extended, 3-fold symmetry, 1,3,5-tris(iodoethynyl)-2,4,6-trifluorobenzene (1) cocrystallizes with a variety of halide salts, namely, Et3S(+)I(-), Et3MeN(+)I(-), Et4N(+)Br(-), Et3BuN(+)Br(-), Me-DABCO(+)I(-), Bu3S(+)I(-), Bu4N(+)Br(-), Ph3S(+)Br(-), Ph4P(+)Br(-), and PPN(+)Br(-). Salts with 1:1 stoichiometry formulated as (1)·(C(+),X(-)) show recurrent formation of corrugated (6,3) networks, with the large cavities thus generated, filled either by the cations and solvent (CHCl3) molecules and/or by interpenetration (up to 4-fold interpenetration). The 2:1 salt formulated as (1)2·(Et3BuN(+)Br(-)) crystallizes in the cubic Ia3 space group (a = 22.573(5) Å, V = 11502(4) Å(3)), with the Br(-) ion located on 3 site and molecule 1 on a 3-fold axis. The 6-fold, unprecedented octahedral coordination of the bromide anion generates an hexagonal three-dimensional network of Pa3 symmetry, as observed in the pyrite model structure, at variance with the usual, but lower-symmetry, rutile-type topology. In this complex system, the I centering gives rise to a 2-fold interpenetration of class Ia, while the cations and solvent molecules are found disordered within interconnected cavities. Another related cubic structure of comparable unit cell volume (space group Pa3̅, a = 22.4310(15) Å, V = 11286.2(13) Å(3)) is found with (1)2·(Et3S(+)I(-)).
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