Canonical integral membrane proteins are attached to lipid bilayers through hydrophobic transmembrane helices, whose topogenesis requires sophisticated insertion machineries. By contrast, membrane proteins that, for evolutionary or functional reasons, cannot rely on these machineries need to resort to driving forces other than hydrophobicity. A striking example is the self-inserting Bacillus subtilis protein Mistic, which is involved in biofilm formation and has found application as a fusion tag supporting the recombinant production and bilayer insertion of other membrane proteins. Although this unusual protein contains numerous polar and charged residues and lacks characteristic membrane-interaction motifs, it is tightly bound to membranes in vivo and membrane-mimetic systems in vitro. Therefore, we set out to quantify the contributions from polar and nonpolar interactions to the coupled folding and insertion of Mistic. To this end, we defined conditions under which the protein can be unfolded completely and reversibly from various detergent micelles by urea in a two-state equilibrium and where the unfolded state is independent of the detergent used for solubilizing the folded state. This enabled equilibrium unfolding experiments previously used for soluble and β-barrel membrane proteins, revealing that polar interactions with ionic and zwitterionic headgroups and, presumably, the interfacial dipole potential stabilize the protein much more efficiently than nonpolar interactions with the micelle core. These findings unveil the forces that allow a protein to tightly interact with a membrane-mimetic environment without major hydrophobic contributions and rationalize the differential suitability of detergents for the extraction and solubilization of Mistic-tagged membrane proteins.

BackgroundIn vitro investigations of membrane proteins usually depend on detergents for protein solubilisation and stabilisation. The amount of detergent bound to a membrane protein is relevant to successful experiment design and data analysis but is often unknown. Triple-detection size-exclusion chromatography enables simultaneous separation of protein/detergent complexes and protein-free detergent micelles and determination of their molar masses in a straightforward and absolute manner. Size-exclusion chromatography is used to separate different species, while ultraviolet absorbance, static light scattering, and refractive index measurements allow molar mass determination of protein and detergent components.ResultsWe refined standard experimental and data-analysis procedures for challenging membrane-protein samples that elude routine approaches. The general procedures including preparatory steps, measurements, and data analysis for the characterisation of both routine and complex samples in difficult solvents such as concentrated denaturant solutions are demonstrated. The applicability of the protocol but also its limitations and possible solutions are discussed, and an extensive troubleshooting section is provided.ConclusionsWe established and validated a protocol for triple-detection size-exclusion chromatography that enables the inexperienced user to perform and analyse measurements of well-behaved protein/detergent complexes. More experienced users are provided with an example of a more sophisticated analysis procedure allowing mass determination under challenging separation conditions.

Denaturant-induced unfolding of helical membrane proteins provides insights into their mechanism of folding and domain organization, which take place in the chemically heterogeneous, anisotropic environment of a lipid membrane. Rhomboid proteases are intramembrane proteases that play key roles in various diseases. Crystal structures have revealed a compact helical bundle with a buried active site, which requires conformational changes for the cleavage of transmembrane substrates. A dimeric form of the rhomboid protease has been shown to be important for activity. In this study, we examine the mechanism of refolding for two distinct rhomboids to gain insight into their secondary structure-activity relationships. Although helicity is largely abolished in the unfolded states of both proteins, unfolding is completely reversible for HiGlpG but only partially reversible for PsAarA. Refolding of both proteins results in reassociation of the dimer, with a 90% regain of catalytic activity for HiGlpG but only a 70% regain for PsAarA. For both proteins, a broad, gradual transition from the native, folded state to the denatured, partly unfolded state was revealed with the aid of circular dichroism spectroscopy as a function of denaturant concentration, thus arguing against a classical two-state model as found for many globular soluble proteins. Thermal denaturation has irreversible destabilizing effects on both proteins, yet reveals important functional details regarding substrate accessibility to the buried active site. This concerted biophysical and functional analysis demonstrates that HiGlpG, with a simple six-transmembrane-segment organization, is more robust than PsAarA, which has seven predicted transmembrane segments, thus rendering HiGlpG amenable to in vitro studies of membrane-protein folding.

Mutations in MYBPC3, the gene encoding the muscle regulatory protein cardiac myosin binding protein-C (cMyBP-C), are among the most common causes of hypertrophic cardiomyopathy (HCM) in both people and cats. However, despite the high prevalence of mutations in MYBPC3, relatively little is understood regarding how mutations lead to disease. One possibility is that some point mutations alter cMyBP-C protein structure leading to enhanced degradation and elimination of the mutant protein. If levels of cMyBP-C protein expression are reduced, then haploinsufficiency (lack of sufficient protein) can trigger disease. Here we tested this idea by analyzing the impact of the A31P mutation, linked to HCM in Maine Coon cats, on 1) the in vitro protein structure of the C0 domain of cMyBP-C, and 2) the total protein expression of cMyBP-C in myocardium of aged cats heterozygous for the A31P mutation. In vitro results demonstrated that the A31P mutation disrupts folding of the C0 domain as shown by three independent methods: altered epitope recognition on Western blots; changes in sensitivity to proteolytic degradation; and reduced b-sheet content assessed by circular dichroism. Western blots of endogenous cMyBP-C obtained from myocardial samples also suggested that C0 structure is altered in vivo because an antibody that preferentially recognizes C0 reacted less with A31P cMyBP-C compared to wild-type cMyBP-C. However, despite these significant structural differences, the A31P cMyBP-C was incorporated into sarcomeres and total cMyBP-C protein (wild-type plus mutant) was similar in wild type and heterozygous A31P cats. These results suggest that despite protein folding abnormalities, the A31P mutation does not lead to haploinsufficiency in the population of older heterozygous cats studied here.

Solid-state 2 H NMR spectra were acquired for different tilt angles of the aligned samples. The methyl group orientations relative to the membrane normal were calculated by fitting the experimental 2 H NMR spectra using a static uniaxial distribution [3] for the protein embedded within lipid bilayers. We found that the orientation of the C9-methyl group obtained from 2 H NMR spectroscopy was similar to that from X-ray data. By contrast, the orientations of the C5-and C13-methyl groups were different versus the X-ray crystal structures. The retinal structure was analyzed using the three-plane model, as in previous studies of rhodopsin in the dark and the Meta-I states [4]. Moreover, a new approach was tested that combines 2 H NMR and X-ray restraints for retinal together with the rhodopsin binding-pocket using simulated annealing. Our results yield new insights into formation of the activated state of the receptor in lipid membranes. [1] A.V. Struts et al. (2011) Nat.