SUMMARYOpen science is a new concept for the practice of experimental laboratory-based research, such as drug discovery. The authors have recently gained experience in how to run such projects and here describe some straightforward steps others may wish to take towards more openness in their own research programmes. Existing and inexpensive online tools can solve many challenges, while some psychological barriers to the free sharing of all data and ideas are more substantial.
Chemical scientists’ experiences with LabTrove.
Society urgently needs new, effective medicines for the treatment of tuberculosis. To kick-start the required hit-to-lead campaigns, the libraries of pharmaceutical companies have recently been evaluated for starting points. The GlaxoSmithKline (GSK) library yielded many high-quality hits and the associated data were placed in the public domain to stimulate engagement by the wider community. One such series, the Spiro compounds, are described here. The compounds were explored by a combination of traditional in-house research and open source methods. The series benefits from a particularly simple structure and a short associated synthetic chemistry route. Many members of the series displayed striking potency and low toxicity, and highly promising in vivo activity in a mouse model was confirmed with one of the analogs. Ultimately the series was discontinued due to concerns over safety, but the associated data remain public domain, empowering others to resume the series if the perceived deficiencies can be overcome. Parameter 1 Mtb H37Rv MIC90 (µM) 0.30 Mtb MIC90 (µM) (108 strains) 0.60 Intracellular H37Rv MIC80 (µM) 0.25 Antibacterial panel IC50 (µM) ≥16 Mammalian cell (HepG2) Tox50 (µM) 36 clogP 2.99 CLint (mL/min•g) mouse microsomes >30 CLint (mL/min•g) human microsomes 25 Solubility CLND (µM) 266 The compound's intra-macrophage activity, selectivity for mycobacteria vs. other bacterial species, and potency against a broad panel of clinical isolates including MDR and XDR strains, in vitro-cidal behavior and a low frequency of spontaneous resistance 13a suggested a highly promising antitubercular profile. The low microsomal stability was a concern and required improvement. In this paper, we report our efforts to optimize this family of compounds through the synthesis of analogs aimed at retaining the antitubercular potency while improving the overall profile for the series. RESULTS AND DISCUSSION Synthesis and In Vitro Evaluation of Analogs Aiming to explore the chemical space of the series, a library of novel compounds was synthesized and evaluated. The compounds were isolated either as free amines or as salts (hydrochloride or
Tuberculosis afflicts an estimated 2 billion people worldwide and causes 1.3 million deaths annually. Chemotherapeutic solutions rely on drugs developed many years ago, with only one new therapeutic having been approved in the last 40 years. Given the rise of drug-resistant strains, there is an urgent need for the development of a more robust drug development pipeline. GlaxoSmithKline recently placed the structures and activities of 177 novel anti-tubercular leads in the public domain, as well as the results of ongoing optimisation of some of the series. Since many of the compounds arose from screening campaigns, their provenance was unclear and synthetic routes were in many cases not reported. Here we present the efficient synthesis of several novel analogues of one family of the GSK compounds—termed “Spiros”—using an oxa-Pictet–Spengler reaction. The new compounds are attractive from a medicinal chemistry standpoint and some were potent against the virulent strain, suggesting this class is worthy of further study. The research was carried out using open source methodology, providing the community with full access to all raw experimental data in real time.
Using [Ni{(POEt)3}4] as catalyst precursor for the catalytic isomerization of allylbenzene to beta‐methylstyrene, time‐course studies suggest a mechanism that is consistent with an autocatalytic reaction. The sigmoidal curve observed when plotting conversion vs. time fits exceptionally well to a kinetic model of an autocatalytic process (R2 = 0.998). We show that the uncoordinated phosphite, generated during the catalyst activation, reduces the acid concentration and, consequently, has a detrimental effect on the formation of the protonated active nickel catalyst. The nickel complex protonation is seen as a key step in forming the active catalytic species. The novel use of a mercury salt as a phosphite scavenger leads to inhibition of the free phosphite's capability to lower acid concentration, improving the catalytic performance of the system, consistent with the mechanism proposed.
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