We established an orange (L) and a tangerine (D) colored callus line by repeatedly subculturing rice callus line (N). The L line accumulated lycopene, β-carotene, and two lycopene isomers, while the D line accumulated much higher concentration of lycopene as well as a lycopene isomer than the L line. Genomic sequencing revealed the presence of SNP that results in the incomplete lycopene β-cyclase (β LCY) enzyme in the D line. We analyzed expression levels of carotenoid biosynthetic genes by qRT-PCR. Regarding the 2-C-methyl-D-erythritol-4-phosphate pathway genes, expression of the gene encoding geranylgeranyl diphosphate synthase 1 (GGPS1) was enhanced in both L and D lines as compared to the N line. Regarding the carotenoid pathway genes, the transcript amounts of the genes encoding phytoene synthase 2, phytoene desaturase, and ζ-carotene desaturase, were larger in the L line than in the N line; however, this pattern was not found in the D line. The expression levels of β LCY and lycopene ε-cyclase (ε LCY) gene in the D line and ε LCY in the L line were lower than in the N line. The transcript amounts of two carotenoid oxygenase genes were decreased both in L and D lines. We concluded that increased expression of GGPS1 and reduced expression of ε LCY, β LCY, and carotenoids oxygenase genes might allow an excess accumulation of carotenoids in L and D lines, and that the mutation in β LCY is responsible for the conspicuous phenotype in the D line as compared to the L line.
scite is a Brooklyn-based organization that helps researchers better discover and understand research articles through Smart Citations–citations that display the context of the citation and describe whether the article provides supporting or contrasting evidence. scite is used by students and researchers from around the world and is funded in part by the National Science Foundation and the National Institute on Drug Abuse of the National Institutes of Health.