A mobile laser-induced fluorescence spectrum (LIFS) lidar was developed for monitoring pollens floating in the atmosphere. The fluorescence spectrum of pollens excited at 355 nm was measured with a fluorescence spectrometer and the results suggested that in general they had peaks at around 460 nm and the ranges were 400–600 nm. A fluorescence spectrum database of 25 different pollens was made with the 355 nm excitation. Based on these results, we developed a LIFS lidar that had features in pollen species identification and daytime operation. The former was achieved by the database and the latter was possible by introducing a synchronous-delay detection to a gated CCD spectrometer in an operation time of 200 ns. Fluorescence detection of pollens floating in the atmosphere was performed using the LIFS lidar in a field where cedars grow in the spring and ragweed in the autumn. The LIFS lidar system successfully detected fluorescence spectrums of the pollens at a distance of approximately 20 m away. We discussed the performance of the LIFS lidar by estimating the number of cedar pollens using a lidar equation, introducing a fluorescence cross section of cedar pollens and a sensitivity of the CCD spectrometer that was measured by ourselves.