Hemipteroid insects (Paraneoptera), with over 10% of all known insect diversity, are a major component of terrestrial and aquatic ecosystems. Previous phylogenetic analyses have not consistently resolved the relationships among major hemipteroid lineages. We provide maximum likelihood-based phylogenomic analyses of a taxonomically comprehensive dataset comprising sequences of 2,395 single-copy, protein-coding genes for 193 samples of hemipteroid insects and outgroups. These analyses yield a well-supported phylogeny for hemipteroid insects. Monophyly of each of the three hemipteroid orders (Psocodea, Thysanoptera, and Hemiptera) is strongly supported, as are most relationships among suborders and families. Thysanoptera (thrips) is strongly supported as sister to Hemiptera. However, as in a recent large-scale analysis sampling all insect orders, trees from our data matrices support Psocodea (bark lice and parasitic lice) as the sister group to the holometabolous insects (those with complete metamorphosis). In contrast, four-cluster likelihood mapping of these data does not support this result. A molecular dating analysis using 23 fossil calibration points suggests hemipteroid insects began diversifying before the Carboniferous, over 365 million years ago. We also explore implications for understanding the timing of diversification, the evolution of morphological traits, and the evolution of mitochondrial genome organization. These results provide a phylogenetic framework for future studies of the group.

A data set comprising DNA sequences from 388 loci and >99,000 aligned nucleotide positions, generated using anchored hybrid enrichment, was used to estimate relationships among 138 leafhoppers and treehoppers representative of all major lineages of Membracoidea, the most diverse superfamily of hemipteran insects. Phylogenetic analysis of the concatenated nucleotide sequence data set using maximum likelihood produced a tree with most branches receiving high support. A separate coalescent gene tree analysis of the same data generally recovered the same strongly supported clades but was less well resolved overall. Several nodes pertaining to relationships among leafhopper subfamilies currently recognized based on morphological criteria were separated by short internodes and received low support. Although various higher taxa were corroborated with improved branch support, relationships among some major lineages of Membracoidea are only somewhat more resolved than previously published phylogenies based on single gene regions or morphology. In agreement with previous studies, the present results indicate that leafhoppers (Cicadellidae) are paraphyletic with respect to the three recognized families of treehoppers (Aetalionidae, Melizoderidae, and Membracidae). Divergence time estimates indicate that most of the poorly resolved divergence events among major leafhopper lineages occurred during the lower to middle Cretaceous and that most modern leafhopper subfamilies, as well as the lineage comprising the three recognized families of treehoppers, also arose during the Cretaceous.

We constructed a phylogeny for the dabbling ducks (tribe Anatini) based on cytochrome-b and ND2 mitochondrial gene DNA sequences. This phylogeny differed in several important respects from a morphological phylogeny developed by Livezey (1991), including the distinctiveness of the blue-winged ducks from other dabbling ducks, the inclusion of the genus Tachyeres and exclusion of Callonetta from the subtribe Anateae, and the lack of support for Mareca as a genus separate from Anas. Characters from three other data sets showed greater consistency with the molecular topology than with the morphological topology. The molecular phylogeny divides the dabbling ducks into four distinct groups: (1) four South American genera, including Amazonetta, Lophonetta, Speculanas, and Tachyeres; (2) the Baikal Teal (Anas formosa); (3) the blue-winged ducks and allies; and (4) a large clade including wigeons, pintails, mallards, and several teal lineages. An examination of the distributions of species in light of the phylogeny indicates relatively little biogeographic structure. Geographic origin for most internal branches is ambiguous using several reconstruction methods. We suggest that the high dispersal ability of birds (especially dabbling ducks) has important implications for recovery of branches using molecular systematics.

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