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Previous studies suggested the multi-millennial scale changes of Australian-Indonesian monsoon (AIM) rainfall, but little is known about their mechanism. Here, AIM rainfall changes since the Last Deglaciation (~18 ka BP) are inferred from geochemical elemental ratios (terrigenous input) and palynological proxies (pollen and spores). Pollen and spores indicate drier Last Deglaciation (before ~11 ka BP) and wetter Holocene climates (after ~11 ka BP). Terrigenous input proxies infer three drier periods (i.e., before ~17, ~15–13.5, and 7–3 ka BP) and three wetter periods (i.e., ~17–15, ~13.5–7, and after ~3 ka BP) which represent the Australian-Indonesian summer monsoon (AISM) rainfall changes. Pollen and spores were highly responsive to temperature changes and showed less sensitivity to rainfall changes due to their wider source area, indicating their incompatibility as rainfall proxy. During the Last Deglaciation, AISM rainfall responded to high latitude climatic events related to the latitudinal shifts of the austral summer ITCZ. Sea level rise, solar activity, and orbitally-induced insolation were most likely the primary driver of AISM rainfall changes during the Holocene, but the driving mechanisms behind the latitudinal shifts of the austral summer ITCZ during this period are not yet understood.

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