Stressed cells shut down translation, release mRNA molecules from polysomes, and form stress granules (SGs) via a network of interactions that involve G3BP. Here we focus on the mechanistic underpinnings of SG assembly. We show that, under non-stress conditions, G3BP adopts a compact auto-inhibited state stabilized by electrostatic intramolecular interactions between the intrinsically disordered acidic tracts and the positively charged arginine-rich region. Upon release from polysomes, unfolded mRNAs outcompete G3BP auto-inhibitory interactions, engendering a conformational transition that facilitates clustering of G3BP through protein-RNA interactions. Subsequent physical crosslinking of G3BP clusters drives RNA molecules into networked RNA/protein condensates. We show that G3BP condensates impede RNA entanglement and recruit additional client proteins that promote SG maturation or induce a liquid-to-solid transition that may underlie disease. We propose that condensation coupled to conformational rearrangements and heterotypic multivalent interactions may be a general principle underlying RNP granule assembly.
A cellular-level study of the pathophysiology is crucial for understanding the mechanisms behind human diseases. Recent advances in quantitative phase imaging (QPI) techniques show promises for the cellular-level understanding of the pathophysiology of diseases. To provide important insight on how the QPI techniques potentially improve the study of cell pathophysiology, here we present the principles of QPI and highlight some of the recent applications of QPI ranging from cell homeostasis to infectious diseases and cancer.
We present high-resolution optical tomographic images of human red blood cells (RBC) parasitized by malaria-inducing Plasmodium falciparum (Pf)-RBCs. Three-dimensional (3-D) refractive index (RI) tomograms are reconstructed by recourse to a diffraction algorithm from multiple two-dimensional holograms with various angles of illumination. These 3-D RI tomograms of Pf-RBCs show cellular and subcellular structures of host RBCs and invaded parasites in fine detail. Full asexual intraerythrocytic stages of parasite maturation (ring to trophozoite to schizont stages) are then systematically investigated using optical diffraction tomography algorithms. These analyses provide quantitative information on the structural and chemical characteristics of individual host Pf-RBCs, parasitophorous vacuole, and cytoplasm. The in situ structural evolution and chemical characteristics of subcellular hemozoin crystals are also elucidated.
The mechanical properties of biological tissues are increasingly recognized as important factors in developmental and pathological processes. Most existing mechanical measurement techniques either necessitate destruction of the tissue for access or provide insufficient spatial resolution. Here, we show for the first time to our knowledge a systematic application of confocal Brillouin microscopy to quantitatively map the mechanical properties of spinal cord tissues during biologically relevant processes in a contact-free and nondestructive manner. Living zebrafish larvae were mechanically imaged in all anatomical planes during development and after spinal cord injury. These experiments revealed that Brillouin microscopy is capable of detecting the mechanical properties of distinct anatomical structures without interfering with the animal's natural development. The Brillouin shift within the spinal cord remained comparable during development and transiently decreased during the repair processes after spinal cord transection. By taking into account the refractive index distribution, we explicitly determined the apparent longitudinal modulus and viscosity of different larval zebrafish tissues. Importantly, mechanical properties differed between tissues in situ and in excised slices. The presented work constitutes the first step toward an in vivo assessment of spinal cord tissue mechanics during regeneration, provides a methodical basis to identify key determinants of mechanical tissue properties, and allows us to test their relative importance in combination with biochemical and genetic factors during developmental and regenerative processes.
Abstract. Three-dimensional imaging of biological cells is crucial for the investigation of cell biology, providing valuable information to reveal the mechanisms behind pathophysiology of cells and tissues. Recent advances in optical diffraction tomography (ODT) have demonstrated the potential for the study of various cells with its unique advantages of quantitative and label-free imaging capability. To provide insight on this rapidly growing field of research and to discuss its applications in biology and medicine, we present the summary of the ODT principle and highlight recent studies utilizing ODT with the emphasis on the applications to the pathophysiology of cells. Stephens, and V. J. Allan, "Light microscopy techniques for live cell Imaging," Science 300, 82-86 (2003). 2. M. Minsky, "Microscopy apparatus," US 3, 013,467 (Dec. 19 1961). 3. W. Denk, J. P. Strickler, and W. W. Webb, "Two-photon laser microscopy," US 5,034,613 (Jul. 23 1991). 4. B. Huang, M. Bates, and X. Zhuang, "Super resolution fluorescence microscopy," Annual Review of Biochemistry 78, 993-1016Biochemistry 78, 993- (2009. 5. E. Wolf, "Three-dimensional structure determination of semi-transparent objects from holographic data,"Optics Communications 1, 153-156 (1969). 6. R. Dändliker, and K. Weiss, "Reconstruction of the three-dimensional refractive index from scattered waves,"Optics Communications 1(7), 323-328 (1970 2427-2439 (1979). 8. N. Streibl, "Three-dimensional imaging by a microscope," Journal of the Optical Society of America A 2(2), 121-127 (1985). 9. S. Kawata, O. Nakamura, and S. Minami, "Optical Microscope Tomography .1. Support Constraint," Journal of the Optical Society of America A 4(1), 292-297 (1987). 10. T. Noda, S. Kawata, and S. Minami, "Three-dimensional phase contrast imaging by an annular illumination microscope," Applied Optics 29(26), 3810-3815 (1990). 11. A. J. Devaney, and A. Schatzberg, "Coherent optical tomographic microscope," Proc. of SPIE 1767SPIE , 62-71 (1992. 12. G. Vishnyakov and G. Levin, "Optical microtomography of phase objects," Optics and Spectroscopy 85(1), 73-77 (1998 tomography with a low-coherence illumination for reducing speckle noise," Proc. of SPIE 9336, 933629 (2015).
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