Nonindigenous lake trout (Salvelinus namaycush) expansion in Yellowstone Lake has led to a large decline in the native Yellowstone cutthroat trout (Oncorhynchus clarkii bouvieri) population. We assessed whether otolith microchemistry could be used to identify subbasin natal origins and longterm use by lake trout as a potential tool for optimizing removal efforts. 87 Sr: 86 Sr and Sr:Ca ratios in otolith cores were used to assess natal origins and 87 Sr: 86 Sr ratios in otolith transects were used to assess movement patterns. Water chemistry was similar throughout the lake, ranging from 0.70634 to 0.70642 and 3.94 to 4.38 mmol/mol for 87 Sr: 86 Sr, and Sr:Ca ratios, respectively. Lake trout otoliths also showed little variation in 87 Sr: 86 Sr and Sr:Ca ratios of the natal region and 87 Sr: 86 Sr across otolith transects. Thus, we found that microchemical differences among Sr isotope and Sr:Ca elemental ratios in otoliths were insufficient to detect the natal origin or extensive within-lake movement that has been established from telemetry investigations. Detailed analysis of other elements or isotopes in hard-part microchemistry, in combination with other tools for detecting movement, may improve detection of natal origin and life history movement among fishes within freshwater lentic systems.

Yellowstone cutthroat trout inhabiting Yellowstone Lake have declined substantially over the past 25 years as a result of predation by invasive lake trout, the presence of whirling disease, and periods of persistent drought. We used otolith microchemistry to assess whether cutthroat trout recruitment patterns have changed in response to these environmental stressors. Though water chemistry variation among the 22 sampled spawning tributaries was low, we identified 9 distinct spawning stream clusters. Random forest models were developed for assessing relative recruitment, yielding a high classification accuracy of 84.4% for known-origin cutthroat trout fry otoliths and 79.0% for simulated otolith signatures based on water chemistry. Proportion of recruitment varied significantly between pre- and post-stressor samples (X2 = 15.40, P = 0.03). The majority of pre- (0.84) and post-stressor (0.77) recruitment occurred in the same three stream clusters, but there was a notable decrease in recruitment in streams with high whirling disease prevalence, and a notable increase from the tributary cluster without whirling disease and with low lake trout predation risk. Conservation efforts should be focused on protecting important spawning tributaries and improving cutthroat trout recruitment in spawning streams that in the past likely contributed much greater numbers of fish.