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The article presents a comparative assessment of the health of students of the Russian Federation and Kazakhstan, obtained by copying and analyzing the distribution by health groups during physical education classes. Statistical data processing was carried out using Statistica 13.0 software. A comparative analysis of the health of students in the Russian Federation and Kazakhstan according to medical records made it possible to establish that at the beginning of education at the university, the number of students with the main group for physical education is 36–42%, during the period of study it decreases to 30–38%. At the same time, there were no significant differences in the analyzed parameters. The obtained data on health assessment are the basis for the development of educational programs in the medical-biological, natural-science areas and for the research work of students. This study was carried out within the framework of the International Scientific and Pedagogical Cooperation.