The gut microbiome, or the community of microorganisms inhabiting the digestive tract, is often unique to its symbiont and, in many animal taxa, is highly influenced by host phylogeny and diet. In this study, we characterized the gut microbiome of the African savanna elephant (Loxodonta africana) and the African forest elephant (Loxodonta cyclotis), sister taxa separated by 2.6–5.6 million years of independent evolution. We examined the effect of host phylogeny on microbiome composition. Additionally, we examined the influence of habitat types (forest versus savanna) and diet types (crop‐raiding versus noncrop‐raiding) on the microbiome within L. africana. We found 58 bacterial orders, representing 16 phyla, across all African elephant samples. The most common phyla were Firmicutes, Proteobacteria, and Bacteroidetes. The microbiome of L. africana was dominated by Firmicutes, similar to other hindgut fermenters, while the microbiome of L. cyclotis was dominated by Proteobacteria, similar to more frugivorous species. Alpha diversity did not differ across species, habitat type, or diet, but beta diversity indicated that microbial communities differed significantly among species, diet types, and habitat types. Based on predicted KEGG metabolic pathways, we also found significant differences between species, but not habitat or diet, in amino acid metabolism, energy metabolism, and metabolism of terpenoids and polyketides. Understanding the digestive capabilities of these elephant species could aid in their captive management and ultimately their conservation.

The white‐tailed deer (Odocoileus virginianus) of Missouri have undergone changes in the past 100 years. From a historical estimate of 700,000 individuals, deer were nearly extirpated from the state following overexploitation in the late 1800s. Despite this, deer have since undergone a rapid expansion to the current population of 1.4 million. Because of this complex recent history, we sought to understand the levels and distribution of genetic diversity in deer across Missouri. We genotyped 751 deer at 10 microsatellite loci and used genetic distance metrics and Bayesian clustering analyses to identify distinct genetic groups. We also sequenced the mitochondrial control region from a subset (n = 248) of deer to identify historical lineages. We found high levels of nuclear marker diversity (HE = 0.818) and low, but statistically significant, levels of differentiation among regions. The high level of mitochondrial diversity (48 haplotypes; haplotype diversity = 0.621–0.964) is reflected in a haplotype network that suggests the persistent signature of translocated lineages. Overall, the white‐tailed deer of Missouri now represent a highly diverse population with no indication that there are barriers to gene flow. This will be an important consideration for the management of disease resistance and spread throughout the state. © 2018 The Wildlife Society.

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