We report a synthetic route for the production of water-sensitive metal−organic frameworks (MOFs) in polymer fiber sorbents by use of metal oxides as seeding intermediates. Cellulose acetate/ZnO (48 wt %) fibers were spun via a dry-jet wet-quench method and converted through hydroxy double salt (HDS) intermediates into HKUST-1 and ZIF-8. MOF loadings within the fiber sorbent reached 85 and 66 wt %, respectively. We demonstrate this process on module-packaged fibers, in which ready-to-use fiber sorbents are synthesized in a moisture-free environment. Modules are then employed in proof-of-concept CO 2 /N 2 breakthrough experiments.
The recent increase in high‐throughput capacity of ‘omics datasets combined with advances and interest in machine learning (ML) have created great opportunities for systems metabolic engineering. In this regard, data‐driven modeling methods have become increasingly valuable to metabolic strain design. In this review, the nature of ‘omics is discussed and a broad introduction to the ML algorithms combining these datasets into predictive models of metabolism and metabolic rewiring is provided. Next, this review highlights recent work in the literature that utilizes such data‐driven methods to inform various metabolic engineering efforts for different classes of application including product maximization, understanding and profiling phenotypes, de novo metabolic pathway design, and creation of robust system‐scale models for biotechnology. Overall, this review aims to highlight the potential and promise of using ML algorithms with metabolic engineering and systems biology related datasets.
Metabolic engineering requires fine-tuned gene expression for most pathway optimization applications. To develop a suitable suite of promoters, traditional bacterial promoter engineering efforts have focused on modifications to the core region, especially the −10 and −35 regions, of native promoters. Here, we demonstrate an alternate, unexplored route of promoter engineering through randomization of the UP element of the promoter—a region that contacts the alpha subunit carboxy-terminal domain instead of the sigma subunit of the RNA polymerase holoenzyme. Through this work, we identify five novel UP element sequences through library-based searches in
Escherichia coli.
The resulting elements were used to activate the
E. coli
core promoter,
rrnD
promoter, to levels on par and higher than the prevalent strong bacterial promoter, OXB15. These relative levels of expression activation were transferrable when applied upstream of alternate core promoter sequences, including
rrnA
and
rrnH
. This work thus presents and validates a novel strategy for bacterial promoter engineering with transferability across varying core promoters and potential for transferability across bacterial species.
Synthetic control of gene expression,
whether simply
promoter selection
or higher-order Boolean-style logic, is an important tool for metabolic
engineering and synthetic biology. This work develops a suite of orthogonal
T7 RNA polymerase systems capable of exerting AND/OR switchlike control
over transcription in the yeastSaccharomyces cerevisiae. When linked with CRISPR dCas9-based regulation systems, more complex
circuitry is possible including AND/OR/NAND/NOR style control in response
to combinations of extracellular copper and galactose. Additionally,
we demonstrate that these T7 system designs are modular and can accommodate
alternative stimuli sensing as demonstrated through blue light induction.
These designs should greatly reduce the time and labor necessary for
developing Boolean gene circuits in yeast with novel applications
including metabolic pathway control in the future.
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