Biomedical event extraction is critical in understanding biomolecular interactions described in scientific corpus. One of the main challenges is to identify nested structured events that are associated with non-indicative trigger words. We propose to incorporate domain knowledge from Unified Medical Language System (UMLS) to a pre-trained language model via a hierarchical graph representation encoded by a proposed Graph Edgeconditioned Attention Networks (GEANet). To better recognize the trigger words, each sentence is first grounded to a sentence graph based on a jointly modeled hierarchical knowledge graph from UMLS. The grounded graphs are then propagated by GEANet, a novel graph neural networks for enhanced capabilities in inferring complex events. On BioNLP 2011 GENIA Event Extraction task, our approach achieved 1.41% F 1 and 3.19% F 1 improvements on all events and complex events, respectively. Ablation studies confirm the importance of GEANet and hierarchical KG.
Document-level entity-based extraction (EE), aiming at extracting entity-centric information such as entity roles and entity relations, is key to automatic knowledge acquisition from text corpora for various domains. Most document-level EE systems build extractive models, which struggle to model long-term dependencies among entities at the document level. To address this issue, we propose a generative framework for two document-level EE tasks: role-filler entity extraction (REE) and relation extraction (RE). We first formulate them as a template generation problem, allowing models to efficiently capture crossentity dependencies, exploit label semantics, and avoid the exponential computation complexity of identifying N-ary relations. A novel cross-attention guided copy mechanism, TOPK COPY, is incorporated into a pre-trained sequence-to-sequence model to enhance the capabilities of identifying key information in the input document. Experiments done on the MUC-4 and SCIREX dataset show new stateof-the-art results on REE (+3.26%), binary RE (+4.8%), and 4-ary RE (+2.7%) in F1 score 1 .
Fully understanding narratives often requires identifying events in the context of whole documents and modeling the event relations. However, document-level event extraction is a challenging task as it requires the extraction of event and entity coreference, and capturing arguments that span across different sentences. Existing works on event extraction usually confine on extracting events from single sentences, which fail to capture the relationships between the event mentions at the scale of a document, as well as the event arguments that appear in a different sentence than the event trigger. In this paper, we propose an end-to-end model leveraging Deep Value Networks (DVN), a structured prediction algorithm, to efficiently capture cross-event dependencies for document-level event extraction. Experimental results show that our approach achieves comparable performance to CRF-based models on ACE05, while enjoys significantly higher computational efficiency.
We present EventPlus, a temporal event understanding pipeline that integrates various stateof-the-art event understanding components including event trigger and type detection, event argument detection, event duration and temporal relation extraction. Event information, especially event temporal knowledge, is a type of common sense knowledge that helps people understand how stories evolve and provides predictive hints for future events. Event-Plus as the first comprehensive temporal event understanding pipeline provides a convenient tool for users to quickly obtain annotations about events and their temporal information for any user-provided document. Furthermore, we show EventPlus can be easily adapted to other domains (e.g., biomedical domain). We make EventPlus publicly available to facilitate event-related information extraction and downstream applications.
Misinformation is a pressing issue in modern society. It arouses a mixture of anger, distrust, confusion, and anxiety that cause damage on our daily life judgments and public policy decisions. While recent studies have explored various fake news detection and media bias detection techniques in attempts to tackle the problem, there remain many ongoing challenges yet to be addressed, as can be witnessed from the plethora of untrue and harmful content present during the COVID-19 pandemic and the international crises of late. In this tutorial, we provide researchers and practitioners with a systematic overview of the frontier in fighting misinformation. Specifically, we dive into the important research questions of how to (i) develop a robust fake news detection system, which not only fact-check information pieces provable by background knowledge but also reason about the consistency and the reliability of subtle details for emerging events; (ii) uncover the bias and agenda of news sources to better characterize misinformation; as well as (iii) correct false information and mitigate news bias, while allowing diverse opinions to be expressed. Moreover, we discuss the remaining challenges, future research directions, and exciting opportunities to help make this world a better place, with safer and more harmonic information sharing.
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