Manual classification of sleep stage is a time-consuming but necessary step in the diagnosis and treatment of sleep disorders, and its automation has been an area of active study. The previous works have shown that low dimensional fast Fourier transform (FFT) features and many machine learning algorithms have been applied. In this paper, we demonstrate utilization of features extracted from EEG signals via FFT to improve the performance of automated sleep stage classification through machine learning methods. Unlike previous works using FFT, we incorporated thousands of FFT features in order to classify the sleep stages into 2–6 classes. Using the expanded version of Sleep-EDF dataset with 61 recordings, our method outperformed other state-of-the art methods. This result indicates that high dimensional FFT features in combination with a simple feature selection is effective for the improvement of automated sleep stage classification.

In many animal-related studies, a high-performance animal behavior recognition system can help researchers reduce or get rid of the limitation of human assessments and make the experiments easier to reproduce. Recently, although deep learning models are holding state-of-the-art performances in human action recognition tasks, these models are not well-studied in applying to animal behavior recognition tasks. One reason is the lack of extensive datasets which are required to train these deep models for good performances. In this research, we investigated two current state-of-the-art deep learning models in human action recognition tasks, the I3D model and the R(2 + 1)D model, in solving a mouse behavior recognition task. We compared their performances with other models from previous researches and the results showed that the deep learning models that pre-trained using human action datasets then fine-tuned using the mouse behavior dataset can outperform other models from previous researches. It also shows promises of applying these deep learning models to other animal behavior recognition tasks without any significant modification in the models' architecture, all we need to do is collecting proper datasets for the tasks and fine-tuning the pre-trained models using the collected data.

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Lysine glutarylation is a post-translational modification (PTM) that plays a regulatory role in various physiological and biological processes. Identifying glutarylated peptides using proteomic techniques is expensive and time-consuming. Therefore, developing computational models and predictors can prove useful for rapid identification of glutarylation. In this study, we propose a model called ProtTrans-Glutar to classify a protein sequence into positive or negative glutarylation site by combining traditional sequence-based features with features derived from a pre-trained transformer-based protein model. The features of the model were constructed by combining several feature sets, namely the distribution feature (from composition/transition/distribution encoding), enhanced amino acid composition (EAAC), and features derived from the ProtT5-XL-UniRef50 model. Combined with random under-sampling and XGBoost classification method, our model obtained recall, specificity, and AUC scores of 0.7864, 0.6286, and 0.7075 respectively on an independent test set. The recall and AUC scores were notably higher than those of the previous glutarylation prediction models using the same dataset. This high recall score suggests that our method has the potential to identify new glutarylation sites and facilitate further research on the glutarylation process.