Common wheat provides approximately 20% of the total dietary calorie intake of human beings. Recent technological advances in whole‐genome sequencing and their application in wheat and its progenitor species provide new opportunities to uncover the genetic variation of wheat traits and to accelerate the traditional breeding (TB) strategies in the context of genomics‐assisted breeding (GAB). Integration of TB, marker‐assisted selection (MAS) and genomic selection (GS) with high‐density SNP markers is expected to accelerate the breeding process and to further enhance genetic gain. With the assistance of the next‐ or third‐generation sequencing technologies and high‐throughput phenotyping platforms, GAB can now realistically be considered in the following area: (i) genome sequencing and high‐quality assembly to uncover new variations, (ii) whole‐genome sequence‐based association studies, (iii) gene function (or functional gene) identification and (iv) integration of whole genomic breeding information, utilizing multi‐omics data and different breeding strategies. We argue that GAB is becoming the preferred strategy in pursuit of new wheat cultivars with superior traits on high yielding, high nutritional quality, climate‐resilience and so on.

Indole-3-acetic acid (IAA) belongs to the family of auxin indole derivatives. IAA regulates almost all aspects of plant growth and development, and is one of the most important plant hormones. In microorganisms too, IAA plays an important role in growth, development, and even plant interaction. Therefore, mechanism studies on the biosynthesis and functions of IAA in microorganisms can promote the production and utilization of IAA in agriculture. This mini-review mainly summarizes the biosynthesis pathways that have been reported in microorganisms, including the indole-3-acetamide pathway, indole-3-pyruvate pathway, tryptamine pathway, indole-3-acetonitrile pathway, tryptophan side chain oxidase pathway, and non-tryptophan dependent pathway. Some pathways interact with each other through common key genes to constitute a network of IAA biosynthesis. In addition, functional studies of IAA in microorganisms, divided into three categories, have also been summarized: the effects on microorganisms, the virulence on plants, and the beneficial impacts on plants.

Fusarium crown rot (FCR) and sharp eyespot (SE) are serious soil‐borne diseases in wheat and its relatives that have been reported to cause wheat yield losses in many areas. In this study, the expression of a cell wall invertase gene, TaCWI‐B1, was identified to be associated with FCR resistance through a combination of bulk segregant RNA sequencing and genome resequencing in a recombinant inbred line population. Two bi‐parental populations were developed to further verify TaCWI‐B1 association with FCR resistance. Overexpression lines and ethyl methanesulfonate (EMS) mutants revealed TaCWI‐B1 positively regulating FCR resistance. Determination of cell wall thickness and components showed that the TaCWI‐B1‐overexpression lines exhibited considerably increased thickness and pectin and cellulose contents. Furthermore, we found that TaCWI‐B1 directly interacted with an alpha‐galactosidase (TaGAL). EMS mutants showed that TaGAL negatively modulated FCR resistance. The expression of TaGAL is negatively correlated with TaCWI‐B1 levels, thus may reduce mannan degradation in the cell wall, consequently leading to thickening of the cell wall. Additionally, TaCWI‐B1‐overexpression lines and TaGAL mutants showed higher resistance to SE; however, TaCWI‐B1 mutants were more susceptible to SE than controls. This study provides insights into a FCR and SE resistance gene to combat soil‐borne diseases in common wheat.