Independent evidence from rocks, fossils, and genes converge on a cohesive narrative of isthmus formation in the Pliocene.

BackgroundDespite being one of the most studied families within the Carnivora, the phylogenetic relationships among the members of the bear family (Ursidae) have long remained unclear. Widely divergent topologies have been suggested based on various data sets and methods.ResultsWe present a fully resolved phylogeny for ursids based on ten complete mitochondrial genome sequences from all eight living and two recently extinct bear species, the European cave bear (Ursus spelaeus) and the American giant short-faced bear (Arctodus simus). The mitogenomic data yield a well-resolved topology for ursids, with the sloth bear at the basal position within the genus Ursus. The sun bear is the sister taxon to both the American and Asian black bears, and this clade is the sister clade of cave bear, brown bear and polar bear confirming a recent study on bear mitochondrial genomes.ConclusionSequences from extinct bears represent the third and fourth Pleistocene species for which complete mitochondrial genomes have been sequenced. Moreover, the cave bear specimen demonstrates that mitogenomic studies can be applied to Pleistocene fossils that have not been preserved in permafrost, and therefore have a broad application within ancient DNA research. Molecular dating of the mtDNA divergence times suggests a rapid radiation of bears in both the Old and New Worlds around 5 million years ago, at the Miocene-Pliocene boundary. This coincides with major global changes, such as the Messinian crisis and the first opening of the Bering Strait, and suggests a global influence of such events on species radiations.

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The present study includes a review of the geographic and stratigraphic distribution of short-faced bears (Ursidae, Tremarctinae) in South America. In addition, the authors discuss biogeographic hypotheses regarding the origin of South American tremarctines. The Tremarctinae subfamily is distributed exclusively in America, from Alaska to southern Patagonia. Its biochron comprises the temporal lapse between Late Miocene and recent times; the first record of Tremarctinae in North America corresponds to the Hemphillian and the last to the Rancholabrean. In South America, the first record corresponds to the Ensenadan. In the present day, it corresponds to the only living tremarctine, the 'Andean Bear,' but short-faced bears became extinct during the early Holocene. The extinction of short-faced bears in North and South America appears to have been approximately synchronous. Finally, the fossil record in South America indicates species turnover between the Ensenadan and Bonaerian, during which time the giant species Arctotherium angustidens was replaced by Arctotherium tarijense, Arctotherium bonaeriense, and Arctotherium vetustum (and probably Arctotherium wingei). q