The silver-nucleoside complex [Ag(i)-(N3-cytidine)2]+, 1, self-assembles to form a supramolecular metal-mediated base-pair array highly analogous to those seen in metallo-DNA.
-Cyrene as a bio-alternative solvent: a highly efficient, waste minimizing protocol for the synthesis of ureas from isocyanates and secondary amines in the bio-available solvent Cyrene is reported. This method eliminated the use of toxic solvents, such as DMF, and established a simple work-up procedure for removal of the Cyrene, which led to a 28-fold increase in molar efficiency versus industrial standard protocols.
A change of solvent provides a means
to modulate the intermetallic
distance of the Ag ion chains in solvated structures of [AgI(cytidine-5′-monophosphate)], a 3D coordination polymer which
features the less common O2,N3-binding mode for the nucleobase. Though
the shortest Ag···Ag separation is within 5% of that
in the metallic element, the coordination polymer is not electrically
conducting, as shown by oriented single-crystal I/V measurements. Band structure calculations for
the isolated coordination chain ([Ag-(O2,N3-Cyt)]+)
n
also support this. Additionally, we demonstrate
that these AgI ion chains are retained when crystalline
MOF samples are processed as dispersions in the liquid phase by ultrasonication,
yielding well-defined bilayer nanosheets through cleavage of phosphoester
O–Ag bonds.
We
have synthesized and structurally characterized examples of
the well-known silver-mediated DNA base pair in its simplest possible
form, as [AgI-bis-(N3-cytosine)]+. The compounds
show differences such as variable coordination geometry, conformation
with cisoid and transoid arrangements,
and, in one case, intramolecular base pairing. Collectively, these
compounds represent three of five permutations of linear/bent coordination
geometry and cisoid/transoid arrangement
of the cytosine ligands and contain the global minimum conformation
as determined by DFT calculations: bent-transoid.
Furthermore, these compounds show no argentophilic intercomplex interactions
in the solid state, in marked contrast to alkylated and nucleoside
analogues, and so do not form the supramolecular 1D “metallo-DNA”
duplex observed in those cases but instead form hydrogen-bonded sheets.
This marked difference may be attributed, in part, to the additional
hydrogen bond donor site at N1 of the nucleobase
that ubiquitously participates in intermolecular interactions.
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