The polyene macrolide antibiotic filipin is widely used as a probe for cholesterol and a diagnostic tool for type C NiemannPick disease. Two position-specific P450 enzymes are involved in the post-polyketide modification of filipin during its biosynthesis, thereby providing molecular diversity to the "filipin complex." CYP105P1 and CYP105D6 from Streptomyces avermitilis, despite their high sequence similarities, catalyze filipin hydroxylation at different positions, C26 and C1, respectively. Here, we determined the crystal structure of the CYP105P1-filipin I complex. The distal pocket of CYP105P1 has the second largest size among P450 hydroxylases that act on macrolide substrates. Compared with previously determined substrate-free structures, the FG helices showed significant closing motion on substrate binding. The long BC loop region adopts a unique extended conformation without a B helix. The binding site is essentially hydrophobic, but numerous water molecules are involved in recognizing the polyol side of the substrate. Therefore, the distal pocket of CYP105P1 provides a specific environment for the large filipin substrate to bind with its pro-S side of position C26 directed toward the heme iron. The ligand-free CYP105D6 structure was also determined. A small sub-pocket accommodating the long alkyl side chain of filipin I was observed in the CYP105P1 structure but was absent in the CYP105D6 structure, indicating that filipin cannot bind to CYP105D6 with a similar orientation due to steric hindrance. This observation can explain the strict regiospecificity of these enzymes.Macrolide compounds have toxic effects on a wide variety of organisms including pathogens, and therefore, their clinical use as antibiotics has been widely developed (1). Postpolyketide modifications of macrolides by cytochrome P450 (P450 or CYP) 2 hydroxylases provide molecular diversity to these macrolides during their biosynthesis (2, 3). P450s are hemoproteins whose fifth axial heme iron ligand is a thiolate group found in a variety of organisms (4, 5). A majority of P450s catalyze monooxygenation (hydroxylation or epoxidation) of hydrophobic substrates (6) using a dioxygen bound as the sixth iron ligand as well as various redox systems responsible for the cleavage of the O-O bond (7-9).Understanding the molecular mechanisms of P450 enzymes during the biosynthesis of natural products would facilitate their potential uses in producing new drugs (10). The crystal structures of macrolide monooxygenases complexed with their substrates or analogues have been determined for P450eryF (CYP107A1; erythromycin biosynthesis) (11, 12), P450 EryK (CYP113A1; erythromycin biosynthesis) (13), P450 PikC (CYP107L1; narbomycin and pikromycin biosynthesis) (14), and P450epoK (CYP167A1; epothilone biosynthesis) (12) (see supplemental Fig. S1). The 28-membered polyene macrolide antibiotic filipin is widely used as a probe for cholesterol in biological membranes (15, 16) and a prominent diagnostic tool for type C Niemann-Pick disease (17, 18). Filipin, origi...

The polyene macrolide antibiotic filipin is widely used as a probe for cholesterol in biological membranes. The filipin biosynthetic pathway of Streptomyces avermitilis contains two position-specific hydroxylases, C26-specific CYP105P1 and C1-specific CYP105D6. In this study, we describe the three X-ray crystal structures of CYP105P1: the ligand-free wild-type (WT-free), 4-phenylimidazole-bound wild-type (WT-4PI), and ligand-free H72A mutant (H72A-free) forms. The BC loop region in the WT-free structure has a unique feature; the side chain of His72 within this region is ligated to the heme iron. On the other hand, this region is highly disordered and widely open in WT-4PI and H72A-free structures, respectively. Histidine ligation of wild-type CYP105P1 was not detectable in solution, and a type II spectral change was clearly observed when 4-phenylimidazole was titrated. The H72A mutant showed spectroscopic characteristics that were almost identical to those of the wild-type protein. In the H72A-free structure, there is a large pocket that is of the same size as the filipin molecule. The highly flexible feature of the BC loop region of CYP105P1 may be required to accept a large hydrophobic substrate.

Bacterial secondary metabolites have huge application potential in multiple industries. Biosynthesis of bacterial secondary metabolites are commonly encoded in a set of genes that are organized in the secondary metabolism biosynthetic gene clusters (SMBGCs). The development of genome sequencing technology facilitates mining bacterial SMBGCs. Marine Streptomyces is a valuable resource of bacterial secondary metabolites. In this study, 87 marine Streptomyces genomes were obtained and carried out into comparative genomic analysis, which revealed their high genetic diversity due to pan-genomes owning 123,302 orthologous clusters. Phylogenomic analysis indicated that the majority of Marine Streptomyces were classified into three clades named Clade I, II, and III, containing 23, 38, and 22 strains, respectively. Genomic annotations revealed that SMBGCs in the genomes of marine Streptomyces ranged from 16 to 84. Statistical analysis pointed out that phylotypes and ecotypes were both associated with SMBGCs distribution patterns. The Clade I and marine sediment-derived Streptomyces harbored more specific SMBGCs, which consisted of several common ones; whereas the Clade II and marine invertebrate-derived Streptomyces have more SMBGCs, acting as more plentiful resources for mining secondary metabolites. This study is beneficial for broadening our knowledge about SMBGC distribution patterns in marine Streptomyces and developing their secondary metabolites in the future.

To further increase the energy and power densities of lithium-ion batteries (LIBs), monoclinic Li V (PO ) attracts much attention. However, the intrinsic low electrical conductivity (2.4 × 10 S cm ) and sluggish kinetics become major drawbacks that keep Li V (PO ) away from meeting its full potential in high rate performance. Recently, significant breakthroughs in electrochemical performance (e.g., rate capability and cycling stability) have been achieved by utilizing advanced nanotechnologies. The nanostructured Li V (PO ) hybrid cathodes not only improve the electrical conductivity, but also provide high electrode/electrolyte contact interfaces, favorable electron and Li transport properties, and good accommodation of strain upon Li insertion/extraction. In this Review, light is shed on recent developments in the application of 0D (nanoparticles), 1D (nanowires and nanobelts), 2D (nanoplates and nanosheets), and 3D (nanospheres) Li V (PO ) for high-performance LIBs, especially highlighting their synthetic strategies and promising electrochemical properties. Finally, the future prospects of nanostructured Li V (PO ) cathodes are discussed.

Pentalenic acid (1) has been isolated from many Streptomyces sp. as a co-metabolite of the sesquiterpenoid antibiotic pentalenolactone and related natural products. We have previously reported the identification of a 13.4-kb gene cluster in the genome of Streptomyces avermitilis implicated in the biosynthesis of the pentalenolactone family of metabolites consisting of 13 open reading frames. Detailed molecular genetic and biochemical studies have revealed that at least seven genes are involved in the biosynthesis of the newly discovered metabolites, neopentalenoketolactone, but no gene specifically dedicated to the formation of pentalenic acid (1) was evident in the same gene cluster. The wild-type strain of S. avermitilis, as well as its derivatives, mainly produce pentalenic acid (1), together with neopentalenoketolactone (9). Disruption of the sav7469 gene encoding a cytochrome P450 (CYP105D7), members of which class are associated with the hydroxylation of many structurally different compounds, abolished the production of pentalenic acid (1). The sav7469-deletion mutant derived from SUKA11 carrying pKU462Hptl-clusterDptlH accumulated 1-deoxypentalenic acid (5), but not pentalenic acid (1). Reintroduction of an extra-copy of the sav7469 gene to SUKA11 Dsav7469 carrying pKU462Hptl-clusterDptlH restored the production of pentalenic acid (1). Recombinant CYP105D7 prepared from Escherichia coli catalyzed the oxidative conversion of 1-deoxypentalenic acid (5) to pentalenic acid (1) in the presence of the electron-transport partners, ferredoxin (Fdx) and Fdx reductase, both in vivo and in vitro. These results unambiguously demonstrate that CYP105D7 is responsible for the conversion of 1-deoxypentalenic acid (5) to pentalenic acid (1), a shunt product in the biosynthesis of the pentalenolactone family of metabolites.