The complete mitochondrial genome of Coregonus autumnalis is determined in this study. The mitogenome is 16,736 bp in length and contains 13 protein-coding genes, 22 transfer RNA genes, 2 ribosomal RNA genes and a D-loop region. The overall base composition of the H-strand is 26.73% A, 29.44% C, 18.14% for G and 25.69% for T. The G+C content is 47.58%. In this article, the mitochondrial genome sequencing for Coregonus autumnalis is carried out for the first time.
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