Rye (Secale cereale L.) is an exceptionally climate-resilient cereal crop, used extensively to produce improved wheat varieties via introgressive hybridization and possessing the entire repertoire of genes necessary to enable hybrid breeding. Rye is allogamous and only recently domesticated, thus giving cultivated ryes access to a diverse and exploitable wild gene pool. To further enhance the agronomic potential of rye, we produced a chromosome-scale annotated assembly of the 7.9-gigabase rye genome and extensively validated its quality by using a suite of molecular genetic resources. We demonstrate applications of this resource with a broad range of investigations. We present findings on cultivated rye’s incomplete genetic isolation from wild relatives, mechanisms of genome structural evolution, pathogen resistance, low-temperature tolerance, fertility control systems for hybrid breeding and the yield benefits of rye–wheat introgressions.

We present a chromosome-scale annotated assembly of the rye (Secale cereale L. inbred line ‘Lo7’) genome, which we use to explore Triticeae genomic evolution, and rye’s superior disease and stress tolerance. The rye genome shares chromosome-level organization with other Triticeae cereals, but exhibits unique retrotransposon dynamics and structural features. Crop improvement in rye, as well as in wheat and triticale, will profit from investigations of rye gene families implicated in pathogen resistance, low temperature tolerance, and fertility control systems for hybrid breeding. We show that rye introgressions in wheat breeding panels can be characterised in high-throughput to predict the yield effects and trade-offs of rye chromatin.

Mulberry is an economically significant crop for the sericulture industry worldwide. Stresses such as drought exposure have a significant influence on plant survival. Because metabolome directly reflects plant physiological condition, performing a global metabolomic analysis is one technique to examine this influence. Using a liquid chromatography-mass spectrometry (LC-MS) technique based on an untargeted metabolomic approach, the effect of drought stress on mulberry Yu-711 metabolic balance was examined. For this objective, Yu-711 leaves were subjected to two weeks of drought stress treatment and control without drought stress. Numerous differentially accumulated metabolic components in response to drought stress treatment were revealed by multivariate and univariate statistical analysis. Drought stress treatment (EG) revealed a more differentiated metabolite response than the control (CK). We found that the levels of total lipids, galactolipids, and phospholipids (PC, PA, PE) were significantly altered, producing 48% of the total differentially expressed metabolites. Fatty acyls components were the most abundant lipids expressed and decreased considerably by 73.6%. On the other hand, the prenol lipids class of lipids increased in drought leaves. Other classes of metabolites, including polyphenols (flavonoids and cinnamic acid), organic acid (amino acids), carbohydrates, benzenoids, and organoheterocyclic, had a dynamic trend in response to the drought stress. However, their levels under drought stress decreased significantly compared to the control. These findings give an overview for the understanding of global plant metabolic changes in defense mechanisms by revealing the mulberry plant metabolic profile through differentially accumulated compounds.

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The present study was carried out in 2016–2017 to assess the effect of subsoiling depth on the soil bulk density, stability of soil structure, soil physical properties and summer maize yield based on a field experiment started in 2015. Four tillage depths were studied: conventional tillage 25 cm (CT₂₅); subsoiling tillage 30 cm (ST₃₀); subsoiling tillage 35 cm (ST₃₅) and subsoiling tillage 40 cm (ST₄₀). The results showed that at the 20–50 cm depth ST₃₀, ST₃₅and ST₄₀ decreased the mean soil bulk by 4.59, 7.13 and 8.27%, respectively, and at the 0–40 cm depth reduced soil compactness by 17.62, 23.63 and 36.42%, respectively, as compared to CT₂₅. ST₄₀ reduced soil compactness in the 0–40 cm soil layer under conditions of relative drought (during the maize season growing season of 2016), ST₃₅ and ST₄₀ increased macroaggregates (> 0.25 mm), improved the stability of the aggregate structure (geometric mean diameter and mean weight diameter) (20–40 cm), increased soil water storage capacity at 40–60 cm and increased maize yield by 7.89% and 8.91%, respectively. Considering the improvement of soil properties and crop yield, ST₃₅ was the optimum method to increase maize yield and modulate soil physical properties in the North China Plain.