An outbreak of haemorrhagic fever with renal syndrome (HFRS) started on Medvednica mountain near Zagreb in January 2012. In order to detect the aetiological agent of the disease in small rodents and to make the link with the human outbreak, rodents were trapped at four different altitudes. Using nested RT-PCR, Puumala virus (PUUV) RNA was detected in 41/53 (77·4%) bank voles (Myodes glareolus) and Dobrava virus (DOBV) RNA was found in 6/61 (9·8%) yellow-necked mice (Apodemus flavicollis). Sequence analysis of a 341-nucleotide region of the PUUV S segment, obtained from all infected bank voles and five HFRS patients, showed 98·8-100% sequence similarity, indicating that the patients were probably exposed to PUUV on Medvednica mountain. A very large bank-vole population combined with an extremely high infection rate of PUUV was responsible for this unusual winter outbreak of HFRS in Croatia.

Tick-borne diseases are a serious threat to both public and veterinary health. In this study, we used high-throughput sequencing to characterize the virome of three tick species implicated in the spread of vector-borne disease throughout Croatia. Ten viruses were identified, including seven potential novel species within the viral families Flaviviridae, Nyamiviridae, Rhabdoviridae, Peribunyaviridae, Phenuiviridae, and Nairoviridae.

Since the role of wild rodents/small mammals in hepatitis E virus (HEV) epidemiology has been a subject of considerable debate, this study was conducted to investigate the potential presence of HEV RNA in small rodents collected within their natural habitats and to detect if they can be potential reservoirs of the virus. A total of 483 small rodents were captured using snap traps placed at 11 regions in Croatia. Sampling was undertaken in 2008 and repeated from 2010 to 2014. Liver samples were tested for the presence of HEV RNA. HEV RNA was detected in only one liver sample (0.21%) originated from Apodemus flavicollis from the location Medvednica, nearby Zagreb collected in 2014. According to the sequence analysis, the isolate has shown to be a member of Orthohepevirus A species, genotype HEV-3. The genotyping results confirmed grouping into subtype 3a, general cluster 3abchij.The detected HEV strain showed to be genetically highly related to strains found in humans and/or domestic pigs and wild boars from Croatia. Our finding indicates that wild small mammals could play a role in the epidemiology of HEV-3 infection and therefore should be taken under consideration as potential reservoirs or/and transmitters of the disease. However, further investigation is needed to recognize their potential for maintaining the infection in natural conditions.

As tick-borne disease incidence and distribution is increasing worldwide, there is a true need for better understanding of the distributional ecology of their vectors. The aim of this study was to determine the diversity of hard ticks fauna (Acari: Ixodidae) and their seasonal dynamics in different habitats at three urban recreational sites in Croatia’s capital, the City of Zagreb, known as the natural foci of Lyme borreliosis and tick borne encephalitis. Within a three-year period (2016 - 2018), the only species detected was Ixodes ricinus Linnaeus, 1758. Using flag dragging method 506 ticks were sampled; 273 (54%) in their nymphal stage, 166 (33%) as larvae and 64 (13%) as adults. The highest abundance of ticks was recorded at forest habitat. Seasonal activity showed their peaks at midspring and midsummer. Continuous monitoring of hard tick population in urban areas should and could become a standard method of tick-borne diseases prevention.

Small rodents (Rodentia, subfam. Murinae: real mice, Arvicoline voles) greatly affect natural regeneration, stability and dynamics of forest communities worldwide. Every 3–4 years rodent damage in Croatian state forests is the most severe in forest regeneration stands, especially in pedunculate oak (Quercus robur L.) and narrow-leaved ash (Fraxinus angustifolia Vahl.) forests, where rodents can seriously impede natural regeneration by damaging seeds, stems and roots of saplings. These negative interactions are an even bigger challenge nowdays as pedunculate oak and narrow-leaved ash have become more vunerable in the last decades and are known as the most sensitive species of lowland forests in Croatia due to microclimatic and macroclimatic changes and the unfavourable interaction of a whole series of anthropogenic, abiotic and biotic factors. In the last 40 years, in Croatian state forests, rodent management consisted of monitoring and mainly rodenticide use. Trying to implement IPM (Integrated Pest Management) postulates into practice over the years, different prevention methods against small rodents were tested, but not many came to use. The aim of this research was to look into different logging residue management approaches and their effect on the rodent damage in two pedunculate oak forest regeneration stands in central Posavina in Croatia. Rodent damage on stem and root of tree saplings was recorded by visual inspection on three plots (5x5 m) with scattered logging residue, and one plot (5x5 m) with no residue at one micro-depression site (95 m a.s.l.), and on one micro-elevation (99 m a.s.l.) site. Plots with scattered logging residue represented a type of forest residue management in which logging debris (branches) is cut to smaller lengths and distributed evenly at the forest regeneration stand. Plot with no logging debris represented a residue management method in which wood mass is completely removed from the regeneration stand after felling. We counted, determined and inspected tree saplings found at chosen plots for rodent damage (on stem and roots) and also determined the average weight and moisture content of logging residue (branches around 5–7 cm in diameter) found at the site. In spring 2017, 3380 tree saplings (2978; 81% pedunculate oak, 7; 0.2% narrow-leaved ash and 395; 11.7% other deciduous species) were inspected for rodent damage. At micro-depression site, on a plot with no logging residue, only 13.4% of the saplings were damaged, while the average share of damaged saplings on three plots with scattered residue was more than six times higher; 87.8%. The average mass of the logging residue weighed at site with scattered residue was 10.14 kg kg/m2 and moisture content was 19.2%. At micro-elevation site, 25.4% of the saplings were damaged on a plot with no logging residue, while the average share of damaged saplings on three plots with scattered residue was two times higher; 51.4%. The average mass of the logging residue weighed at SRP 1–3 was 5.1 kg/m2. We also determined moderately strong positive correlation (R=0.69133) between the mass of logging residue and rodent damage and strong negative correlation (R=–0.89598) between wood moisture content of the logging residue and rodent damage. In years ahead, with unpredictable climate effects and potentially very variable small rodent dynamics, removing the logging residue after the felling could represent a residue management that contributes to a more effective and ecologically based rodent management. It could also become a usable preventive method within IPM and help prevent sever rodent damage, even during the outbreaks in pedunculate oak regeneration stands.