The pyrimidine metabolic pathway is tightly regulated in microorganisms, allowing limited success in metabolic engineering for the production of pathway‐related substances. Here, we constructed a four‐enzyme coupled system for the in vitro production of uridine triphosphate (UTP). The enzymes used include nucleoside kinase, uridylate kinase, nucleoside diphosphate kinase, and polyphosphate kinase for energy regeneration. All these enzymes are derived from extremophiles. To increase the total and unit time yield of the product, three enzymes other than polyphosphate kinase were modified separately by multiple protein engineering strategies. A nucleoside kinase variant with increased specific activity from 2.7 to 36.5 U/mg, a uridylate kinase variant (specific activity of 37.1 U/mg) with a 5.2‐fold increase in thermostability, and a nucleoside diphosphate kinase variant with a 2‐fold increase in a specific activity to over 900 U/mg were obtained, respectively. The reaction conditions of the coupled system were further optimized, and a two‐stage method was taken to avoid the problem of enzymatic pH adaptation mismatch. Under optimal conditions, this system can produce more than 65 mM UTP (31.5 g/L) in 3.0 h. The substrate conversion rate exceeded 98% and the maximum UTP productivity reached 40 mM/h.
Increasing yields while reducing
costs is one of the ultimate pursuits
of industrial production. To achieve this goal in the enzymatic production
of multiple nucleotides, in this study, a co-immobilized polyphosphate
kinase–nucleoside kinase hybridized nanoflower system (PPK@NK)
was constructed. To improve the productivity, the nucleoside kinase
(NK) used was rationally designed, and a variant with significantly
increased activity compared to the wild type was obtained. The polyphosphate
kinase (PPK) and NK could be sequentially adsorbed on the surface
of hybrid nanoflowers at room temperature (25 °C) through the
interaction of Cu2+ and proteins without any other chemical
pretreatment. The optimal preparation conditions and reaction parameters
of PPK@NK hybrid nanoflowers were investigated. Under optimal reaction
conditions, the newly prepared co-immobilization system could catalyze
the conversion of 100 mM uridine, cytidine, and inosine to the corresponding
nucleotides completely within 4 h and could be reused at least six
times. The storage stability of the co-immobilized system was more
than 2-fold higher than that of the free enzyme, and there was no
significant difference in thermostability. PPK@NK hybridized nanoflowers
have properties such as easy preparation and storage and low cost,
indicating their suitability for the efficient production of nucleotides.
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