The population of shrimps, especially the macrobrachium genus, has been affected with habitat pollution and overexploitation. Shrimps provide a major protein source to animals higher in the food chain. The importance of studying the ecology of shrimps in their different habitats helps in their preservation and provides possibilities of carcinoculture. This study examines diversity, ecology and reproduction parameters of fresh water shrimps of the genus macrobrachium in the basins of Lepmassoun and Ondoamedza rivers. Lepmassoun and Ondoamedza rivers form part of the larger Nyong river basin in Cameroon. In situ water physicochemical parameters were determined on site, preserved water samples used in mineral analysis and subsequent ecological health assessment. Shrimps were sampled using the scoop method with hand nets and analyzed. Sampling was done in 5 seasons distributed from January 2017 to February 2018. The results of physicochemical parameters indicate that water in the two rivers was slightly mineralized, sufficiently oxygenated and slightly turbid. It was generally a non-polluted ecological zone for shrimps. A total of 113 shrimps distributed among 14 species were collected.