The Nuclear Central American Highlands (NCAH) is a mountainous region located within a complex transition zone. Here, we analyzed the distribution patterns of 282 species of resident land birds of the NCAH. We gathered a database with records of presence of species, from which we generated realized ecological niche models using the Genetic Algorithm for Rule Set Production. These ecological niche models were used to obtain maps of each species' potential distribution and generated species richness maps that were also compared to the map of protected areas. In addition, the maps were overlaid with a 0.25 diameter hexagonal grid to generate a presence-absence matrix to create regionalizations through (a) a Parsimony Analysis of Endemism and (b) a phenogram. Results show contrasting patterns of distribution between total species richness and endemic species richness. The regionalizations show groups influenced by slope and altitude. Species composition is mainly Mesoamerican and Neotropical species. Our results offer a new view of the regional understanding of bird diversity patterns and biogeographical processes that have shaped regional richness, like the effects of the Great American Biotic Interchange that are visible in the species composition of the NCAH. We believe that these maps of both species richness and regionalization can serve as useful tools for conservation biologists and authorities in implementing strategies for the protection of natural areas in the NCAH.

Humid tropical forests in Mesoamerica are distributed along the Atlantic slope and, in scattered locations, along the Mexican Pacific slope. These poorly explored Mexican forests include microendemic bird species. Two species in the genus Dendrocolaptes occur in lowland and foothill humid tropical forests of Mesoamerica. One of these, D. sanctithomae, is comprised of four subspecies, of which the two that occur in Mexico, D. s. sanctithomae and D. s. sheffleri, are distinctly different morphologically, and the latter is a poorly known microendemic taxon of the Mexican Pacific humid tropical forest in the Sierra Madre del Sur. We used both nuclear (nDNA) and mitochondrial DNA (mtDNA) to evaluate the genetic variation of D. sanctithomae in Mexico, and complemented this with a quantitative analysis of phenotypic traits. We also conducted analyses of environmental niche models to test the hypothesis of niche differentiation of D. s. sheffleri from other taxa of D. sanctithomae. Our phylogenetic reconstructions of mtDNA consistently recovered D. s. sheffleri and D. s. sanctithomae as reciprocally monophyletic, while they shared alleles of nDNA. These mtDNA differences are comparable with differences reported between other Dendrocolaptes sister-taxa pairs. Our analysis of phenotypic traits also indicated that the taxa differ in measurements of hallux and feather barring. In contrast, niche differentiation tests suggest that the niches of both taxa are more similar than expected by chance. Our evidence leads us to propose species status for D. sheffleri. This is an additional example of recent speciation in Mexico that indicates active and peripatric evolutionary differentiation in the northern Neotropics.

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