The analysis of scalar and vector fields in quantum chemistry is an essential task for the computational chemistry community, where such quantities must be evaluated rapidly to perform a particular study. For example, the atoms in molecules approach proposed by Bader has become popular; however, this method demands significant computational resources to compute the involved tasks in short times. In this article, we discuss the importance of graphics processing units (GPU) to analyze electron density, and related fields, implementing several scalar, and vector fields within the graphics processing units for atoms and molecules (GPUAM) code developed by a group of the Universidad Autónoma Metropolitana in México City. With this application, the quantum chemistry community can perform demanding computational tasks on a desktop, where CPUs and GPUs are used to their maximum capabilities. The performance of GPUAM is tested in several systems and over different GPUs, where a GPU installed in a workstation converts it to a robust high‐performance computing system.
A recent article by Anderson and co-workers challenges our conclusions on the aromaticity of the four oxidation states of a butadyine-linked six-porphyrin nanoring, based on the experimental 1 H-NMR data and some recent calculations they have performed using the BLYP35 functional. Here, we show that BLYP35 should be taken with caution and demonstrate that the indirect evidence of a ring current from experimental 1 H-NMR data is not a definite proof of aromaticity.
Although
benzene and borazine are isoelectronic and isostructural,
they have very different electronic structures, mainly due to the
polar nature of the B–N bond. Herein, we present an experimental
study of the charge density distribution obtained from the multipole
model formalism and Hirshfeld atom refinement (HAR) based on high-resolution
X-ray diffraction data of borazine B3N3H6 (1) and B,B′,B″-trichloroborazine (2) crystals. These data are compared to those obtained from HAR for
benzene (4) and 1,3,5-trichlorobenzene (5) and further compared with values obtained from density functional
theory calculations in the gas phase, where N,N′,N″-trichloroborazine (3) was also included. The results confirm that, unlike benzene,
borazines are only weakly aromatic with an island-like electronic
delocalization within the B3N3 ring involving
only the nitrogen atoms. Furthermore, delocalization indices and interacting
quantum atom energy for bonded and non-bonded atoms were found to
be highly suitable indicators capable of describing the origin of
the discrepancies observed when the degree of aromaticity in 2 and 3 is evaluated using common aromaticity
indices. Additionally, analysis of intermolecular interactions in
the crystals brings further evidence of a weakly aromatic character
of the borazines as it reveals surprising similarities between the
crystal packing of borazine and benzene and also between B,B′,B″-trichloroborazine
and 1,3,5-trichlorobenzene.
The potential energy surface of Zn O clusters (n = 2, 4, 6, 8) has been explored by using a simulated annealing method. For n = 2, 4, and 6, the CCSD(T)/TZP method was used as the reference, and from here it is shown that the M06-2X/TZP method gives the lowest deviations over PBE, PBE0, B3LYP, M06, and MP2 methods. Thus, with the M06-2X method we predict isomers of Zn O clusters, which coincide with some isomers reported previously. By using the atoms in molecules analysis, possible contacts between Zn and O atoms were found for all structures studied in this article. The bond paths involved in several clusters suggest that Zn O clusters can be obtained from the zincite (ZnO crystal), such an observation was confirmed for clusters with n = 2 - 9,18 and 20. The structure with n = 23 was obtained by the procedure presented here, from crystal information, which could be important to confirm experimental data delivered for n = 18 and 23.
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