Abstract. In contrast to its small surface area, the coastal zone plays a disproportionate role in the global carbon cycle. Carbon production, transformation, emission and burial rates at the land-ocean interface are significant at the global scale but still poorly known, especially in tropical regions. Surface water pCO 2 and ancillary parameters were monitored during nine field campaigns between April 2013 and April 2014 in Guanabara Bay, a tropical eutrophic to hypertrophic semienclosed estuarine embayment surrounded by the city of Rio de Janeiro, southeast Brazil. Water pCO 2 varied between 22 and 3715 ppmv in the bay, showing spatial, diurnal and seasonal trends that mirrored those of dissolved oxygen (DO) and chlorophyll a (Chl a). Marked pCO 2 undersaturation was prevalent in the shallow, confined and thermally stratified waters of the upper bay, whereas pCO 2 oversaturation was restricted to sites close to the small river mouths and small sewage channels, which covered only 10 % of the bay's area. Substantial daily variations in pCO 2 (up to 395 ppmv between dawn and dusk) were also registered and could be integrated temporally and spatially for the establishment of net diurnal, seasonal and annual CO 2 fluxes. In contrast to other estuaries worldwide, Guanabara Bay behaved as a net sink of atmospheric CO 2 , a property enhanced by the concomitant effects of strong radiation intensity, thermal stratification, and high availability of nutrients, which promotes phytoplankton development and net autotrophy. The calculated CO 2 fluxes for Guanabara Bay ranged between −9.6 and −18.3 mol C m −2 yr −1 , of the same order of magnitude as the organic carbon burial and organic carbon inputs from the watershed. The positive and high net community production (52.1 mol C m −2 yr −1 ) confirms the high carbon production in the bay. This autotrophic metabolism is apparently enhanced by eutrophication. Our results show that global CO 2 budgetary assertions still lack information on tropical, marine-dominated estuarine systems, which are affected by thermal stratification and eutrophication and behave specifically with respect to atmospheric CO 2 .

The increasing concentrations of methane (CH 4 ) in the atmosphere stress the importance of monitoring and quantifying the fluxes from coastal environments. In nine sampling campaigns between 2013 and 2014, we measured the spatial CH 4 concentrations, identified major sources and calculated the fluxes at the airwater interface in an eutrophic tropical embayment, Guanabara Bay, Rio de Janeiro, Brazil. The bay presented high spatial variability of CH 4 concentrations, without a significant trend with salinity, but observed the influence of the urban areas at its watershed. Although the more polluted sector of the bay accounts for about 10% of the sampled surface area, it contributed to one half of the bay's total CH 4 emissions. In most cases, high CH 4 concentrations seemed be sustained by allochtonous sources such as the sewage network and polluted rivers, especially under high accumulated precipitation conditions. In the most stratified area, at the inner and centre of the Bay, CH 4 concentrations were not significantly higher in bottom hypoxic waters than in surface waters, suggesting that CH 4 diffusion from these sediments was modest, due to the prevalence of sulphate reduction over methanogenesis. Our calculated annual air-sea fluxes (565-980 lmol m 22 d 21 ) are well above those of most estuaries worldwide, showing that urban pollution can be an important source of CH 4 to the coastal waters and even more significant than the presence of organic-rich environments, like salt marshes and mangroves. Comparing the greenhouse gas emissions in terms of CO 2 -equivalent, CH 4 emissions reduced the net CO 2 sink in Guanabara Bay by 16%.