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We studied the activity of a calcium-dependent proteinase, calpain, in subcellular fractions obtained from rat brain tissue. The rates of calpain-mediated hydrolysis of fluorescein isothiocyanate (FITC)-labeled substrates, casein and fodrin, were comparable; in the former case the rate was higher. This fact stipulated the choice of fluorescent-labeled casein as an adequate substrate. The greatest enzyme activity of calpain (87% of total) was found in the cytoplasmic fraction. At the same time, quite detectable enzyme activities were observed in the investigated membrane fractions obtained from rat brain tissue (coarse mitochondrial fraction, microsomes, and myelin). The highest specific calpain activity was registered in the cytoplasmic fraction. The enzyme activity was efficiently suppressed in the presence of calpain inhibitor I and increased after purification of the preparations from an endogenous calpain inhibitor, calpastatin.