Lions were the most widespread carnivores in the late Pleistocene, ranging from southern Africa to the southern USA, but little is known about the evolutionary relationships among these Pleistocene populations or the dynamics that led to their extinction. Using ancient DNA techniques, we obtained mitochondrial sequences from 52 individuals sampled across the present and former range of lions. Phylogenetic analysis revealed three distinct clusters: (i) modern lions, Panthera leo; (ii) extinct Pleistocene cave lions, which formed a homogeneous population extending from Europe across Beringia (Siberia, Alaska and western Canada); and (iii) extinct American lions, which formed a separate population south of the Pleistocene ice sheets. The American lion appears to have become genetically isolated around 340 000 years ago, despite the apparent lack of significant barriers to gene flow with Beringian populations through much of the late Pleistocene. We found potential evidence of a severe population bottleneck in the cave lion during the previous interstadial, sometime after 48 000 years, adding to evidence from bison, mammoths, horses and brown bears that megafaunal populations underwent major genetic alterations throughout the last interstadial, potentially presaging the processes involved in the subsequent end-Pleistocene mass extinctions.

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Abstract Late Miocene continental deposits overlying the Khersonian marine sediments near the city of Maikop bordering the Belaya River (North Caucasus) yielded a diverse biotic record including palynology, ostracods, fresh-water and terrestrial molluscs, fishes, amphibians and reptiles, birds, and mammals. The obtained data indicate predominantly wooded landscapes along the banks of a large fresh-water estuarine or lagoonal basin with occasional connection with the sea. The basin existed in a warm temperate to subtropical climate with a high humidity and an estimated mean annual precipitation above 800 mm. The mammalian assemblage with Hipparion spp., Alilepus sp., Paraglirulus schultzi, Eozapus intermedius, Parapodemus lugdunensis, Collimys caucasicus sp. nov., Neocricetodon cf. progressus, etc. is referable to the early Turolian, MN 11. The data regarding composition and stage of evolution of the small mammal content combined with mostly normal polarity of the fossiliferous deposits, and the age estimates of the upper Khersonian boundary as between 8.6 and 7.9 Ma indicate a plausible correlation with Chron C4n and an age range between 8.1–7.6 Ma.